Variant report

Variant	rs73629682
Chromosome Location	chr19:37863868-37863869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37861996..37864602-chr19:37959702..37962085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171827	Chromatin interaction
ENSG00000196437	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59049228	0.91[AFR][1000 genomes]
rs59748804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60346583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579464	chr19:37858660-37881556	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37862200-37867200	ZNF genes & repeats	A549	lung
2	chr19:37862600-37864400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr19:37862600-37864400	Weak transcription	Small Intestine	intestine
4	chr19:37862600-37864600	Weak transcription	Aorta	Aorta
5	chr19:37862600-37864600	Weak transcription	Left Ventricle	heart
6	chr19:37862600-37864600	Weak transcription	Ovary	ovary
7	chr19:37862600-37864600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr19:37862600-37864800	Weak transcription	Colonic Mucosa	Colon
9	chr19:37862600-37865000	Weak transcription	Placenta	Placenta
10	chr19:37862600-37865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:37862600-37865800	Weak transcription	Esophagus	oesophagus
12	chr19:37862600-37865800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr19:37862600-37866600	Weak transcription	Gastric	stomach
14	chr19:37862600-37866600	Weak transcription	Stomach Mucosa	stomach
15	chr19:37862600-37871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:37862800-37864000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:37862800-37864000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:37862800-37864000	Weak transcription	Primary B cells from cord blood	blood
19	chr19:37862800-37864000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:37862800-37864000	Weak transcription	Adipose Nuclei	Adipose
21	chr19:37862800-37864000	Weak transcription	Liver	Liver
22	chr19:37862800-37864000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr19:37862800-37864000	Weak transcription	HSMM	muscle
24	chr19:37862800-37864400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:37862800-37864400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr19:37862800-37864400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr19:37862800-37864600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:37862800-37864600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr19:37862800-37864600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:37862800-37864600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:37862800-37864600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:37862800-37864600	Weak transcription	Brain Germinal Matrix	brain
33	chr19:37862800-37864600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr19:37862800-37864600	Weak transcription	Fetal Muscle Leg	muscle
35	chr19:37862800-37864600	Weak transcription	Fetal Thymus	thymus
36	chr19:37862800-37864600	Weak transcription	Pancreas	Pancrea
37	chr19:37862800-37864600	Weak transcription	NH-A	brain
38	chr19:37862800-37864800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:37862800-37864800	Weak transcription	Fetal Lung	lung
40	chr19:37862800-37865000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:37862800-37865000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr19:37862800-37865000	Weak transcription	Colon Smooth Muscle	Colon
43	chr19:37862800-37865000	Weak transcription	Fetal Intestine Large	intestine
44	chr19:37862800-37865000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr19:37862800-37865000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:37862800-37865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr19:37862800-37865200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr19:37862800-37865200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr19:37862800-37865200	Weak transcription	NHDF-Ad	bronchial
50	chr19:37862800-37865400	Weak transcription	H1 Cell Line	embryonic stem cell

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