Variant report

Variant	rs73630135
Chromosome Location	chr19:38758000-38758001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:38753031..38764322-chr19:38787496..38798494,54	MCF-7	breast:
2	chr19:38756484..38758356-chr19:38759970..38761671,3	K562	blood:
3	chr19:38757716..38759532-chr19:38810909..38812505,2	MCF-7	breast:
4	chr19:38749183..38751568-chr19:38756557..38758524,2	MCF-7	breast:
5	chr19:38755234..38758154-chr19:38804246..38806924,3	K562	blood:
6	chr19:38755242..38758154-chr19:38804246..38806924,2	K562	blood:
7	chr19:38756224..38759208-chr19:38851853..38853767,2	MCF-7	breast:
8	chr19:38741015..38744013-chr19:38756329..38758796,2	MCF-7	breast:
9	chr19:38718052..38720655-chr19:38755234..38758069,2	MCF-7	breast:
10	chr19:38753341..38760825-chr19:38779856..38783291,10	MCF-7	breast:
11	chr19:38755353..38758137-chr19:38878117..38880491,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179168	Chromatin interaction
ENSG00000167645	Chromatin interaction
ENSG00000188766	Chromatin interaction
ENSG00000266963	Chromatin interaction
ENSG00000011332	Chromatin interaction
ENSG00000167641	Chromatin interaction
ENSG00000167644	Chromatin interaction
ENSG00000167642	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10426091	1.00[EUR][1000 genomes]
rs2014952	1.00[EUR][1000 genomes]
rs60026344	1.00[EUR][1000 genomes]
rs73627694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38754600-38759000	Active TSS	Rectal Smooth Muscle	rectum
2	chr19:38754800-38758400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr19:38755400-38758600	Active TSS	Esophagus	oesophagus
4	chr19:38755600-38760600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr19:38755800-38760600	Enhancers	K562	blood
6	chr19:38755800-38765200	Weak transcription	Right Atrium	heart
7	chr19:38756000-38758000	Weak transcription	Ovary	ovary
8	chr19:38756000-38758200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr19:38756000-38758600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:38756000-38761000	Weak transcription	HSMMtube	muscle
11	chr19:38756200-38758000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr19:38756200-38758200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr19:38756200-38758400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr19:38756200-38758800	Enhancers	Lung	lung
15	chr19:38756200-38759400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:38756200-38759400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr19:38756400-38758000	Enhancers	Primary B cells from cord blood	blood
18	chr19:38756600-38758200	Flanking Active TSS	Pancreas	Pancrea
19	chr19:38756600-38758400	Enhancers	Primary hematopoietic stem cells	blood
20	chr19:38756600-38758800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr19:38756600-38759000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr19:38756600-38759000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
23	chr19:38756600-38760000	Enhancers	Stomach Mucosa	stomach
24	chr19:38756600-38772600	Weak transcription	Primary T cells from cord blood	blood
25	chr19:38756600-38772600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr19:38756800-38758000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr19:38756800-38758000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:38756800-38758000	Enhancers	Brain Cingulate Gyrus	brain
29	chr19:38756800-38758000	Enhancers	Fetal Thymus	thymus
30	chr19:38756800-38758600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:38756800-38758600	Weak transcription	Brain Angular Gyrus	brain
32	chr19:38756800-38758800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr19:38756800-38759000	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr19:38756800-38759600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr19:38756800-38760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr19:38756800-38761000	Weak transcription	Brain Anterior Caudate	brain
37	chr19:38756800-38761400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr19:38756800-38772600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr19:38756800-38774800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr19:38756800-38775000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr19:38756800-38778600	Weak transcription	Thymus	Thymus
42	chr19:38756800-38779600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr19:38757000-38761000	Weak transcription	Colon Smooth Muscle	Colon
44	chr19:38757000-38761000	Weak transcription	Fetal Muscle Leg	muscle
45	chr19:38757200-38758000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr19:38757200-38758000	Flanking Active TSS	Placenta	Placenta
47	chr19:38757200-38758200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr19:38757200-38758400	Enhancers	NH-A	brain
49	chr19:38757400-38758000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
50	chr19:38757400-38758000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links