Variant report

Variant	rs73639935
Chromosome Location	chr9:3059820-3059821
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56020201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56094644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56254522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56327964	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58579571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58991445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61255829	1.00[AMR][1000 genomes]
rs73639917	1.00[AMR][1000 genomes]
rs73639918	1.00[AMR][1000 genomes]
rs73639920	1.00[AMR][1000 genomes]
rs73639922	1.00[AMR][1000 genomes]
rs73639923	0.85[AFR][1000 genomes]
rs73639924	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73639926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73639932	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73639936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv892085	chr9:2937654-3215842	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831494	chr9:3007268-3172056	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv892087	chr9:3014702-3153178	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1017474	chr9:3019068-3247215	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892088	chr9:3019383-3215842	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1025022	chr9:3024191-3074498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3058000-3060400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:3058200-3060400	Enhancers	NHEK	skin
3	chr9:3058400-3060400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:3058400-3060400	Enhancers	HMEC	breast
5	chr9:3059200-3060400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:3059600-3060200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:3059600-3060200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:3059600-3060200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:3059600-3060400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:3059600-3060400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:3059600-3060400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:3059600-3060400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:3059800-3060200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:3059800-3060200	Enhancers	HepG2	liver
15	chr9:3059800-3060400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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