Variant report

Variant	rs73642031
Chromosome Location	chr9:10612168-10612169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr9:10612117-10612266	HepG2	liver:	n/a	n/a
2	ZNF263	chr9:10612052-10613344	HEK293-T-REx	kidney:	n/a	chr9:10612853-10612862
3	MAFK	chr9:10612150-10612350	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000226717	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56280034	1.00[ASN][1000 genomes]
rs73642022	1.00[ASN][1000 genomes]
rs73642023	1.00[ASN][1000 genomes]
rs73642024	1.00[ASN][1000 genomes]
rs73642026	1.00[ASN][1000 genomes]
rs73642027	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831507	chr9:10439463-10676779	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1023764	chr9:10504157-10685587	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539997	chr9:10504157-10685587	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1032936	chr9:10541177-10633543	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831508	chr9:10584843-10769475	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv892326	chr9:10603372-10660729	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10607400-10613600	Active TSS	Fetal Brain Female	brain
2	chr9:10608600-10614400	Active TSS	Fetal Brain Male	brain
3	chr9:10609200-10612200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:10610000-10613400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:10610200-10613600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:10611600-10613400	Active TSS	Brain Anterior Caudate	brain
7	chr9:10611600-10613400	Active TSS	Brain Cingulate Gyrus	brain
8	chr9:10611600-10613400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:10611600-10613800	Active TSS	Brain Angular Gyrus	brain
10	chr9:10611800-10612200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:10611800-10612200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr9:10611800-10612200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:10611800-10613400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
14	chr9:10611800-10614000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:10612000-10612200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr9:10612000-10612200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr9:10612000-10612200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
18	chr9:10612000-10612200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:10612000-10612200	Enhancers	HMEC	breast
20	chr9:10612000-10612400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
21	chr9:10612000-10612400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:10612000-10612600	Flanking Active TSS	NHEK	skin
23	chr9:10612000-10613400	Active TSS	Brain Substantia Nigra	brain
24	chr9:10612000-10613400	Bivalent/Poised TSS	Fetal Kidney	kidney
25	chr9:10612000-10613600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr9:10612000-10613600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:10612000-10613600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr9:10612000-10614000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr9:10612000-10614200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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