Variant report

Variant	rs73642434
Chromosome Location	chr9:14899213-14899214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56277083	1.00[AMR][1000 genomes]
rs59555304	1.00[AMR][1000 genomes]
rs60047464	1.00[AMR][1000 genomes]
rs73642457	1.00[AMR][1000 genomes]
rs73642458	1.00[AMR][1000 genomes]
rs73642491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14881200-14904600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:14882000-14902400	Weak transcription	Fetal Stomach	stomach
3	chr9:14884200-14907400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14887400-14902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:14889800-14900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:14895200-14906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:14897000-14902000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:14897000-14902400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:14897200-14901800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:14897200-14902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:14897200-14902200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:14897200-14902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:14897400-14902000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:14897400-14902000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:14897800-14901400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:14899000-14899400	Enhancers	Fetal Muscle Leg	muscle
17	chr9:14899000-14899800	Flanking Active TSS	Colon Smooth Muscle	Colon
18	chr9:14899000-14900800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:14899000-14900800	Enhancers	Pancreas	Pancrea
20	chr9:14899000-14901000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:14899200-14899400	Genic enhancers	Aorta	Aorta
22	chr9:14899200-14899400	Enhancers	Fetal Lung	lung
23	chr9:14899200-14899600	Enhancers	HepG2	liver
24	chr9:14899200-14900000	Enhancers	Fetal Intestine Large	intestine
25	chr9:14899200-14900200	Enhancers	Adipose Nuclei	Adipose
26	chr9:14899200-14900200	Enhancers	Ovary	ovary
27	chr9:14899200-14900200	Enhancers	Stomach Smooth Muscle	stomach
28	chr9:14899200-14900400	Enhancers	Fetal Kidney	kidney

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