Variant report

Variant	rs73642487
Chromosome Location	chr9:14991784-14991785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55783059	0.96[ASN][1000 genomes]
rs55818920	0.82[ASN][1000 genomes]
rs56036616	0.82[ASN][1000 genomes]
rs66462482	0.92[ASN][1000 genomes]
rs67086694	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67226056	0.98[ASN][1000 genomes]
rs7042441	0.82[ASN][1000 genomes]
rs7851933	0.82[ASN][1000 genomes]
rs9697216	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14981000-14992400	Weak transcription	Fetal Heart	heart
2	chr9:14982200-14992600	Weak transcription	Fetal Lung	lung
3	chr9:14982600-14992000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:14987200-14992400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:14988400-14992000	Weak transcription	Primary T cells from cord blood	blood
6	chr9:14988400-14992200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:14990000-14992800	Weak transcription	NH-A	brain
8	chr9:14991400-14992000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:14991400-14992000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:14991400-14992000	Flanking Active TSS	Dnd41	blood
11	chr9:14991400-14992400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:14991400-14992800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:14991600-14991800	Weak transcription	Esophagus	oesophagus
14	chr9:14991600-14992200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:14991600-14992200	Weak transcription	Placenta	Placenta
16	chr9:14991600-14992400	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr9:14991600-14992600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:14991600-14993800	Active TSS	K562	blood
19	chr9:14991600-14994400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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