Variant report

Variant	rs73642610
Chromosome Location	chr9:3180850-3180851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60173221	1.00[AMR][1000 genomes]
rs73642607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642609	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892085	chr9:2937654-3215842	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1017474	chr9:3019068-3247215	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892088	chr9:3019383-3215842	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028668	chr9:3139007-3262791	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv539939	chr9:3139007-3262791	Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3177600-3181000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:3177800-3181000	Weak transcription	Pancreas	Pancrea
3	chr9:3180200-3181000	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr9:3180400-3181000	Bivalent Enhancer	HepG2	liver
5	chr9:3180600-3181000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:3180600-3181000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:3180600-3181000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:3180600-3181000	Bivalent/Poised TSS	Fetal Brain Female	brain
9	chr9:3180600-3181000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr9:3180600-3181400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:3180600-3181400	Active TSS	Brain Anterior Caudate	brain
12	chr9:3180600-3181800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
13	chr9:3180600-3182000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:3180600-3182200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr9:3180600-3182200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr9:3180600-3182200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr9:3180800-3181000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
18	chr9:3180800-3181000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:3180800-3181000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:3180800-3181000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
21	chr9:3180800-3181000	Enhancers	Esophagus	oesophagus
22	chr9:3180800-3181000	Bivalent Enhancer	Fetal Lung	lung
23	chr9:3180800-3181000	Bivalent Enhancer	Fetal Stomach	stomach
24	chr9:3180800-3181000	Bivalent/Poised TSS	Right Ventricle	heart
25	chr9:3180800-3181200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr9:3180800-3181200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr9:3180800-3181200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
28	chr9:3180800-3181200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
29	chr9:3180800-3181200	Bivalent Enhancer	Fetal Brain Male	brain
30	chr9:3180800-3181400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr9:3180800-3181400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:3180800-3181400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:3180800-3181600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:3180800-3181600	Active TSS	Colon Smooth Muscle	Colon
35	chr9:3180800-3181800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr9:3180800-3181800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
37	chr9:3180800-3181800	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr9:3180800-3181800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
41	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
44	chr9:3180800-3181800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr9:3180800-3181800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
47	chr9:3180800-3182000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:3180800-3182000	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr9:3180800-3182000	Bivalent Enhancer	Fetal Heart	heart
50	chr9:3180800-3182200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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