Variant report

Variant	rs73642611
Chromosome Location	chr9:3182168-3182169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60173221	0.95[ASN][1000 genomes]
rs7035823	1.00[ASN][1000 genomes]
rs73377959	0.95[ASN][1000 genomes]
rs73642607	0.95[ASN][1000 genomes]
rs73642608	0.95[ASN][1000 genomes]
rs73642609	1.00[ASN][1000 genomes]
rs73642612	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892085	chr9:2937654-3215842	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1017474	chr9:3019068-3247215	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892088	chr9:3019383-3215842	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028668	chr9:3139007-3262791	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv539939	chr9:3139007-3262791	Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3180600-3182200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:3180600-3182200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr9:3180600-3182200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:3180800-3182200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr9:3181000-3182200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr9:3181000-3182200	Bivalent/Poised TSS	HepG2	liver
7	chr9:3181200-3182200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:3181400-3182200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:3181600-3184200	Weak transcription	Brain Substantia Nigra	brain
10	chr9:3181800-3182200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr9:3181800-3182200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr9:3181800-3182200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr9:3182000-3182200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
14	chr9:3182000-3182200	Bivalent Enhancer	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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