Variant report

Variant	rs73642994
Chromosome Location	chr9:15144895-15144896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55826170	1.00[AMR][1000 genomes]
rs73642990	1.00[AFR][1000 genomes]
rs73646007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15135400-15146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:15135800-15146000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:15137200-15156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:15137400-15147000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:15138800-15146600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:15138800-15146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:15139000-15146600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:15139600-15146600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:15139800-15146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:15140200-15146600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:15141000-15154400	Weak transcription	Fetal Stomach	stomach
12	chr9:15143200-15146400	Weak transcription	Fetal Thymus	thymus
13	chr9:15144200-15145000	Enhancers	HMEC	breast
14	chr9:15144200-15145000	Enhancers	Osteobl	bone
15	chr9:15144200-15145200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:15144200-15145200	Enhancers	Fetal Lung	lung
17	chr9:15144400-15145000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:15144400-15145000	Enhancers	Fetal Brain Male	brain
19	chr9:15144400-15145000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:15144400-15145000	Enhancers	Hela-S3	cervix
21	chr9:15144400-15145000	Enhancers	NH-A	brain
22	chr9:15144400-15145000	Enhancers	NHEK	skin
23	chr9:15144400-15145200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:15144600-15145000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:15144600-15145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:15144600-15146600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr9:15144600-15146600	Enhancers	Fetal Brain Female	brain
28	chr9:15144800-15145000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:15144800-15146600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links