Variant report

Variant	rs73643109
Chromosome Location	chr9:26855320-26855321
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57626814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62544412	0.89[AFR][1000 genomes]
rs7036055	0.80[AFR][1000 genomes]
rs7042173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs869057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:26832200-26866800	Weak transcription	Gastric	stomach
4	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
6	chr9:26834200-26858800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:26834200-26859000	Weak transcription	Fetal Kidney	kidney
8	chr9:26834200-26870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
10	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
11	chr9:26834200-26880200	Weak transcription	Lung	lung
12	chr9:26834200-26880200	Weak transcription	NHEK	skin
13	chr9:26834200-26882200	Weak transcription	HMEC	breast
14	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
16	chr9:26836400-26859000	Weak transcription	Fetal Brain Male	brain
17	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
18	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
19	chr9:26837800-26855800	Weak transcription	Osteobl	bone
20	chr9:26838000-26878200	Weak transcription	Brain Germinal Matrix	brain
21	chr9:26838200-26858800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
23	chr9:26839000-26858600	Weak transcription	Small Intestine	intestine
24	chr9:26839400-26855600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:26840600-26859000	Weak transcription	Fetal Brain Female	brain
26	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:26840800-26855600	Weak transcription	Brain Anterior Caudate	brain
28	chr9:26840800-26865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:26841000-26855600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon
32	chr9:26841600-26862600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:26842600-26859000	Weak transcription	Colon Smooth Muscle	Colon
34	chr9:26842600-26882200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:26842800-26879600	Weak transcription	Thymus	Thymus
36	chr9:26843200-26878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:26846000-26861800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr9:26846400-26870600	Weak transcription	Fetal Stomach	stomach
39	chr9:26846600-26881600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:26847000-26883000	Weak transcription	K562	blood
41	chr9:26847400-26863200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:26847600-26856400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:26848000-26859600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr9:26848200-26856200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:26848600-26857200	Weak transcription	Fetal Intestine Small	intestine
46	chr9:26848800-26856600	Strong transcription	Hela-S3	cervix
47	chr9:26849000-26856800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr9:26849000-26857000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr9:26849000-26860000	Strong transcription	Primary B cells from cord blood	blood
50	chr9:26849000-26860800	Strong transcription	Liver	Liver

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