Variant report

Variant	rs73643279
Chromosome Location	chr9:18446913-18446914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10429466	1.00[AMR][1000 genomes]
rs12115643	1.00[AMR][1000 genomes]
rs16936614	1.00[AMR][1000 genomes]
rs1930265	1.00[AMR][1000 genomes]
rs2185376	1.00[AMR][1000 genomes]
rs2383067	1.00[AMR][1000 genomes]
rs58472234	1.00[AMR][1000 genomes]
rs59656656	1.00[AMR][1000 genomes]
rs61460291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18439200-18447200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:18439200-18447200	Weak transcription	Fetal Lung	lung
3	chr9:18439200-18447200	Weak transcription	Left Ventricle	heart
4	chr9:18439200-18447200	Weak transcription	Lung	lung
5	chr9:18439200-18447400	Weak transcription	Right Atrium	heart
6	chr9:18439200-18447600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:18442600-18447200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:18443000-18447600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:18443200-18447000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:18443200-18447200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:18443200-18447200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:18443200-18447200	Weak transcription	Aorta	Aorta
13	chr9:18443200-18447200	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:18443200-18447200	Weak transcription	NH-A	brain
15	chr9:18443200-18457400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:18443400-18447200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:18443400-18447200	Weak transcription	HMEC	breast
18	chr9:18443400-18447200	Weak transcription	NHDF-Ad	bronchial
19	chr9:18443400-18447400	Weak transcription	Osteobl	bone
20	chr9:18443600-18447000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:18445200-18447200	Weak transcription	Fetal Heart	heart
22	chr9:18446000-18448400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:18446400-18448400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:18446400-18448800	Enhancers	Liver	Liver
25	chr9:18446600-18447000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:18446600-18447200	Enhancers	Stomach Smooth Muscle	stomach
27	chr9:18446600-18447600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:18446600-18448000	Enhancers	Brain Anterior Caudate	brain
29	chr9:18446600-18448000	Enhancers	Ovary	ovary
30	chr9:18446600-18448000	Enhancers	Rectal Smooth Muscle	rectum
31	chr9:18446600-18448600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr9:18446600-18448600	Enhancers	Colon Smooth Muscle	Colon
33	chr9:18446600-18448600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr9:18446800-18447000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:18446800-18447200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:18446800-18447600	Enhancers	NHEK	skin
37	chr9:18446800-18448400	Enhancers	Adipose Nuclei	Adipose
38	chr9:18446800-18448400	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links