Variant report

Variant	rs73645556
Chromosome Location	chr9:18981242-18981243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10511664	0.83[ASN][1000 genomes]
rs1932450	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2209777	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56903563	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56992415	0.92[ASN][1000 genomes]
rs60784683	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475278	0.84[ASN][1000 genomes]
rs7043607	0.83[ASN][1000 genomes]
rs73431244	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431256	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73433251	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73645550	1.00[ASN][1000 genomes]
rs73648807	0.83[ASN][1000 genomes]
rs73648809	0.83[ASN][1000 genomes]
rs73648810	0.83[ASN][1000 genomes]
rs73648811	0.83[ASN][1000 genomes]
rs73648812	0.83[ASN][1000 genomes]
rs73648814	0.83[ASN][1000 genomes]
rs73648815	0.83[ASN][1000 genomes]
rs73648816	0.83[ASN][1000 genomes]
rs7847488	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862966	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863544	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866883	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18981600	Weak transcription	Gastric	stomach
2	chr9:18977000-18981400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:18977000-18981400	Weak transcription	Aorta	Aorta
4	chr9:18977000-18981400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:18977000-18982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:18977200-18982200	Weak transcription	NHEK	skin
7	chr9:18978800-18981800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:18979400-18982000	Enhancers	Fetal Lung	lung
9	chr9:18979400-18982800	Enhancers	Osteobl	bone
10	chr9:18979600-18981400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:18979600-18981800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:18979600-18982000	Enhancers	Fetal Stomach	stomach
13	chr9:18979800-18981400	Weak transcription	Left Ventricle	heart
14	chr9:18979800-18981600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:18979800-18981800	Weak transcription	Esophagus	oesophagus
16	chr9:18979800-18982000	Weak transcription	Lung	lung
17	chr9:18979800-18982400	Enhancers	Fetal Heart	heart
18	chr9:18979800-18983000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:18980400-18981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:18980400-18981400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:18980400-18981400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:18980400-18981400	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:18980400-18981400	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:18980400-18981600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:18980400-18981600	Weak transcription	Ovary	ovary
26	chr9:18980400-18982000	Weak transcription	NHLF	lung
27	chr9:18980400-18984400	Weak transcription	Stomach Mucosa	stomach
28	chr9:18980600-18981600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:18980600-18981600	Weak transcription	Fetal Thymus	thymus
30	chr9:18980600-18981800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:18980600-18981800	Weak transcription	Brain Anterior Caudate	brain
32	chr9:18980600-18981800	Weak transcription	Right Atrium	heart
33	chr9:18981000-18981600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:18981000-18982000	Weak transcription	Fetal Kidney	kidney
35	chr9:18981000-18982600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:18981000-18983200	Enhancers	NHDF-Ad	bronchial

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