Variant report

Variant	rs73646238
Chromosome Location	chr9:16755966-16755967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16935001	1.00[AMR][1000 genomes]
rs58020758	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58544132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58641200	1.00[AMR][1000 genomes]
rs59992326	1.00[AMR][1000 genomes]
rs60301783	1.00[AMR][1000 genomes]
rs60906399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61238834	1.00[AMR][1000 genomes]
rs61394737	1.00[AMR][1000 genomes]
rs7029657	1.00[AMR][1000 genomes]
rs7042309	1.00[AMR][1000 genomes]
rs7044406	1.00[AMR][1000 genomes]
rs73646209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646241	1.00[AMR][1000 genomes]
rs7862245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16758000	Weak transcription	Ovary	ovary
2	chr9:16745400-16774800	Weak transcription	Osteobl	bone
3	chr9:16745600-16766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16750000-16756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:16750000-16756600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:16753200-16757200	Enhancers	Fetal Intestine Large	intestine
7	chr9:16754000-16766600	Weak transcription	NHDF-Ad	bronchial
8	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:16754400-16767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:16755000-16756000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:16755200-16756200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr9:16755400-16756000	Enhancers	Fetal Intestine Small	intestine
13	chr9:16755600-16756000	Enhancers	Rectal Smooth Muscle	rectum
14	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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