Variant report

Variant	rs73648498
Chromosome Location	chr9:85425631-85425632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73648497	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85422200-85427200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:85422400-85426800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:85423600-85425800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:85423600-85426600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:85423600-85428800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:85423600-85439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:85423800-85443200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:85425000-85425800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:85425000-85426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:85425000-85426600	Enhancers	NHEK	skin
11	chr9:85425200-85426400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:85425400-85437400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:85425600-85425800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr9:85425600-85426600	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links