Variant report

Variant	rs73649043
Chromosome Location	chr9:16831331-16831332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16923229	1.00[AMR][1000 genomes]
rs56751764	1.00[AMR][1000 genomes]
rs57957677	1.00[AMR][1000 genomes]
rs73649037	1.00[AMR][1000 genomes]
rs73649038	1.00[AMR][1000 genomes]
rs73649040	1.00[AMR][1000 genomes]
rs73649041	1.00[AMR][1000 genomes]
rs73649042	1.00[AMR][1000 genomes]
rs73649045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73649046	1.00[AMR][1000 genomes]
rs7858031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16829200-16832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:16829200-16852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16829400-16831400	Enhancers	Colon Smooth Muscle	Colon
4	chr9:16829400-16831400	Enhancers	Osteobl	bone
5	chr9:16829400-16833200	Weak transcription	NHLF	lung
6	chr9:16829400-16833400	Weak transcription	Ovary	ovary
7	chr9:16829400-16836400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:16829400-16839800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:16829600-16831400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:16829600-16832200	Weak transcription	Fetal Intestine Small	intestine
11	chr9:16829600-16832400	Weak transcription	Fetal Intestine Large	intestine
12	chr9:16829800-16835600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:16829800-16864200	Weak transcription	NH-A	brain
14	chr9:16830000-16833000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:16830400-16833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:16830600-16831400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:16830600-16833200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:16830600-16834400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:16830800-16831400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:16830800-16831400	Enhancers	HSMMtube	muscle
21	chr9:16830800-16834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:16831000-16831600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:16831000-16833400	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:16831000-16833600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:16831000-16834400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:16831000-16834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr9:16831000-16837400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:16831000-16859600	Weak transcription	HSMM	muscle
29	chr9:16831200-16831600	Weak transcription	NHDF-Ad	bronchial
30	chr9:16831200-16833400	Weak transcription	Fetal Stomach	stomach
31	chr9:16831200-16852600	Weak transcription	Fetal Lung	lung
32	chr9:16831200-16863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:16831200-16864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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