Variant report

Variant	rs73649172
Chromosome Location	chr9:73179294-73179295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59398665	0.83[AFR][1000 genomes]
rs61345600	0.85[AFR][1000 genomes]
rs73649138	0.92[AFR][1000 genomes]
rs73649170	0.84[AFR][1000 genomes]
rs73649173	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73170000-73189000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:73170200-73181200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:73170800-73188400	Weak transcription	Right Atrium	heart
5	chr9:73176200-73179400	Enhancers	NHLF	lung
6	chr9:73176200-73179600	Enhancers	Adipose Nuclei	Adipose
7	chr9:73176200-73180000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:73176200-73180400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:73176400-73180200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:73177200-73181400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:73177600-73180000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:73177800-73179400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr9:73177800-73179400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:73177800-73179400	Flanking Active TSS	GM12878-XiMat	blood
15	chr9:73177800-73179800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr9:73177800-73179800	Enhancers	Osteobl	bone
17	chr9:73177800-73180000	Enhancers	Primary B cells from peripheral blood	blood
18	chr9:73177800-73180000	Enhancers	Primary hematopoietic stem cells	blood
19	chr9:73177800-73180000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:73177800-73180000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:73177800-73180000	Enhancers	Fetal Lung	lung
22	chr9:73177800-73180200	Enhancers	Fetal Thymus	thymus
23	chr9:73178000-73179400	Enhancers	HMEC	breast
24	chr9:73178000-73179600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr9:73178000-73179800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:73178000-73179800	Enhancers	Placenta	Placenta
27	chr9:73178000-73179800	Enhancers	Thymus	Thymus
28	chr9:73178000-73180000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr9:73178000-73180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:73178000-73180200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:73178000-73181200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:73178200-73179600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr9:73178200-73179600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:73178200-73179600	Enhancers	NH-A	brain
35	chr9:73178400-73179400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:73178400-73179800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:73178400-73181600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:73178400-73183600	Weak transcription	Small Intestine	intestine
39	chr9:73178600-73179600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr9:73178600-73179800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:73178600-73180000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:73178600-73181600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:73178600-73184000	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:73178800-73179800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:73178800-73180000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:73178800-73181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:73178800-73181400	Enhancers	Primary T cells fromperipheralblood	blood
48	chr9:73178800-73181600	Weak transcription	HSMMtube	muscle
49	chr9:73178800-73181800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:73178800-73182000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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