Variant report

Variant	rs73649403
Chromosome Location	chr9:92930435-92930436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10820944	0.89[ASN][1000 genomes]
rs12377039	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1412126	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56949836	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57524084	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58036793	0.91[ASN][1000 genomes]
rs61026679	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73490440	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73651764	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92925200-92933200	Weak transcription	Esophagus	oesophagus
2	chr9:92927600-92930600	Enhancers	Pancreas	Pancrea
3	chr9:92927600-92931400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr9:92927800-92931200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr9:92928000-92931400	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:92929200-92935200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:92930000-92930600	Enhancers	Fetal Lung	lung
8	chr9:92930000-92931200	Enhancers	Colonic Mucosa	Colon
9	chr9:92930000-92931800	Enhancers	Fetal Intestine Large	intestine
10	chr9:92930000-92932200	Enhancers	Stomach Mucosa	stomach
11	chr9:92930200-92930800	Enhancers	HepG2	liver
12	chr9:92930200-92931000	Enhancers	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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