Variant report

Variant	rs73649938
Chromosome Location	chr9:21689232-21689233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55689357	1.00[AFR][1000 genomes]
rs56322499	1.00[AFR][1000 genomes]
rs61145696	1.00[AFR][1000 genomes]
rs73649930	0.87[AFR][1000 genomes]
rs73649933	1.00[AFR][1000 genomes]
rs73649946	1.00[AFR][1000 genomes]
rs73649948	0.87[AFR][1000 genomes]
rs73649955	1.00[AFR][1000 genomes]
rs73649956	1.00[AFR][1000 genomes]
rs73649957	1.00[AFR][1000 genomes]
rs73649958	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21680400-21691000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:21685200-21691000	Enhancers	Hela-S3	cervix
3	chr9:21685200-21695600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:21685800-21690200	Enhancers	HUVEC	blood vessel
5	chr9:21686000-21691000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21687200-21689400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:21687200-21689800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:21688000-21689600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:21688000-21689800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:21688200-21689400	Weak transcription	Esophagus	oesophagus
11	chr9:21688400-21689800	Enhancers	Stomach Mucosa	stomach
12	chr9:21688400-21696200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:21688800-21689400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:21688800-21690200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:21688800-21690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:21688800-21690200	Flanking Active TSS	A549	lung
17	chr9:21688800-21691000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:21688800-21691000	Enhancers	HSMM	muscle
19	chr9:21688800-21691000	Enhancers	NH-A	brain
20	chr9:21688800-21691000	Enhancers	NHEK	skin
21	chr9:21688800-21691000	Enhancers	NHLF	lung
22	chr9:21688800-21691000	Enhancers	Osteobl	bone
23	chr9:21688800-21691400	Enhancers	HMEC	breast
24	chr9:21688800-21691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:21689000-21689400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:21689000-21689400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:21689000-21691000	Enhancers	NHDF-Ad	bronchial
28	chr9:21689200-21689400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr9:21689200-21689400	Active TSS	Duodenum Mucosa	Duodenum
30	chr9:21689200-21690000	Enhancers	HSMMtube	muscle

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