Variant report

Variant	rs73649993
Chromosome Location	chr9:21853264-21853265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:21853181-21853938	HepG2	liver:	n/a	chr9:21853875-21853891 chr9:21853874-21853890
2	MAFF	chr9:21853212-21853723	HepG2	liver:	n/a	chr9:21853361-21853379
3	MAFK	chr9:21853159-21853817	HepG2	liver:	n/a	chr9:21853383-21853394
4	E2F4	chr9:21853056-21853294	MCF10A-Er-Src	breast:	n/a	n/a
5	MAFK	chr9:21853218-21853525	HepG2	liver:	n/a	chr9:21853383-21853394
6	NFIC	chr9:21852590-21853274	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MTAP	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1333033	1.00[EUR][1000 genomes]
rs1591137	1.00[EUR][1000 genomes]
rs2069419	1.00[AMR][1000 genomes]
rs3731207	1.00[AMR][1000 genomes]
rs3731225	1.00[AMR][1000 genomes]
rs55796448	1.00[AMR][1000 genomes]
rs6475603	1.00[EUR][1000 genomes]
rs7027610	1.00[AMR][1000 genomes]
rs73649982	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21839400-21854400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
3	chr9:21841600-21854200	Weak transcription	Hela-S3	cervix
4	chr9:21841600-21854400	Weak transcription	NHLF	lung
5	chr9:21841600-21854600	Weak transcription	NHDF-Ad	bronchial
6	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
7	chr9:21841800-21854600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:21841800-21854800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:21841800-21854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:21841800-21855400	Weak transcription	Gastric	stomach
11	chr9:21841800-21856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:21841800-21856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:21841800-21858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:21841800-21864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:21842000-21854600	Weak transcription	HSMMtube	muscle
16	chr9:21842000-21854600	Weak transcription	NHEK	skin
17	chr9:21842000-21854600	Weak transcription	Osteobl	bone
18	chr9:21842000-21855000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:21842000-21857800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:21842000-21858400	Weak transcription	Right Ventricle	heart
21	chr9:21846000-21854800	Weak transcription	Fetal Kidney	kidney
22	chr9:21846600-21869800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:21847600-21871600	Strong transcription	Dnd41	blood
24	chr9:21847800-21854200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:21848000-21869600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:21848200-21856200	Strong transcription	Primary T cells from cord blood	blood
27	chr9:21848400-21854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:21848800-21854000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:21848800-21854200	Weak transcription	Thymus	Thymus
30	chr9:21848800-21854200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr9:21848800-21854600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:21848800-21854600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:21848800-21854600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:21848800-21854800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:21848800-21861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr9:21848800-21866000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:21849000-21853600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:21849000-21854000	Weak transcription	Fetal Thymus	thymus
39	chr9:21849000-21854200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:21849000-21854200	Weak transcription	Placenta	Placenta
41	chr9:21849000-21854200	Weak transcription	Left Ventricle	heart
42	chr9:21849000-21854200	Weak transcription	Psoas Muscle	Psoas
43	chr9:21849000-21854400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:21849000-21854400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:21849000-21854600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:21849000-21854800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr9:21849000-21854800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:21849000-21854800	Weak transcription	Brain Substantia Nigra	brain
49	chr9:21849000-21854800	Weak transcription	Fetal Brain Male	brain
50	chr9:21849000-21854800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links