Variant report

Variant	rs7365
Chromosome Location	chr11:93211764-93211765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10831051	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11603107	1.00[CHB][hapmap]
rs11604399	1.00[CHB][hapmap]
rs11606253	1.00[CHB][hapmap]
rs11606261	1.00[CHB][hapmap]
rs11606262	1.00[CHB][hapmap]
rs12789912	1.00[CHB][hapmap]
rs12791489	1.00[CHB][hapmap]
rs12795164	1.00[CHB][hapmap]
rs12796609	1.00[CHB][hapmap]
rs12797006	0.91[ASN][1000 genomes]
rs12806700	1.00[CHB][hapmap]
rs12808363	0.83[ASN][1000 genomes]
rs16834	0.85[YRI][hapmap]
rs2045313	0.89[AFR][1000 genomes]
rs2045460	0.97[EUR][1000 genomes]
rs2045461	0.89[AFR][1000 genomes]
rs2305660	1.00[CHB][hapmap]
rs2605591	0.81[AFR][1000 genomes]
rs2605592	0.83[AFR][1000 genomes]
rs2605593	0.99[EUR][1000 genomes]
rs2605594	0.93[AFR][1000 genomes]
rs2605595	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs2605596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2605599	0.89[AFR][1000 genomes]
rs2605601	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs2605602	0.88[AFR][1000 genomes]
rs2605603	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2605604	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608273	0.89[AFR][1000 genomes]
rs2658794	0.81[AFR][1000 genomes]
rs2658795	0.81[AFR][1000 genomes]
rs2658796	0.97[AFR][1000 genomes]
rs2658797	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2658799	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2658800	0.93[AFR][1000 genomes]
rs3207348	0.83[ASN][1000 genomes]
rs34716358	0.83[ASN][1000 genomes]
rs34825570	0.83[ASN][1000 genomes]
rs35061570	0.83[ASN][1000 genomes]
rs35548120	0.83[ASN][1000 genomes]
rs3794002	1.00[CHB][hapmap]
rs3794007	1.00[CHB][hapmap]
rs3794008	1.00[CHB][hapmap]
rs6483248	1.00[CHB][hapmap]
rs66464546	0.83[ASN][1000 genomes]
rs67927069	0.83[ASN][1000 genomes]
rs7130465	1.00[CHB][hapmap]
rs7933953	1.00[CHB][hapmap]
rs897555	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs897558	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93200600-93214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:93207800-93220000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:93208200-93223200	Weak transcription	GM12878-XiMat	blood
5	chr11:93208400-93212000	Weak transcription	Ovary	ovary
6	chr11:93208400-93218400	Weak transcription	Left Ventricle	heart
7	chr11:93208600-93217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:93208800-93213000	Strong transcription	Liver	Liver
9	chr11:93209000-93214200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:93209000-93231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:93209200-93213200	Weak transcription	Small Intestine	intestine
13	chr11:93209200-93215000	Weak transcription	Right Ventricle	heart
14	chr11:93209200-93229200	Weak transcription	Dnd41	blood
15	chr11:93209400-93214200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:93209400-93215000	Weak transcription	Right Atrium	heart
17	chr11:93209400-93218800	Strong transcription	Fetal Intestine Small	intestine
18	chr11:93209600-93211800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:93209600-93212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:93209600-93213000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:93209600-93214800	Strong transcription	Aorta	Aorta
22	chr11:93209600-93229400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:93209800-93212200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:93209800-93212200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:93209800-93213000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:93209800-93217200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:93210000-93211800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:93210000-93212200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:93210000-93215800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:93210200-93211800	Weak transcription	Colonic Mucosa	Colon
31	chr11:93210200-93212600	Enhancers	Fetal Brain Male	brain
32	chr11:93210400-93211800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:93210400-93213000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr11:93210400-93213800	Weak transcription	Stomach Mucosa	stomach
35	chr11:93210600-93212000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:93210600-93213000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:93210600-93213200	Strong transcription	Lung	lung
38	chr11:93210600-93214400	Weak transcription	Esophagus	oesophagus
39	chr11:93210600-93214800	Strong transcription	Spleen	Spleen
40	chr11:93210600-93215400	Weak transcription	Fetal Lung	lung
41	chr11:93210600-93220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:93210600-93231600	Weak transcription	A549	lung
43	chr11:93210800-93212000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:93210800-93212000	Weak transcription	Gastric	stomach
45	chr11:93210800-93212400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:93210800-93213400	Strong transcription	Pancreas	Pancrea
47	chr11:93211000-93212200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:93211000-93212400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:93211000-93214200	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:93211000-93214200	Weak transcription	Hela-S3	cervix

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