Variant report

Variant	rs73650047
Chromosome Location	chr9:22088041-22088042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22080093..22089919-chr9:22099951..22109614,29	MCF-7	breast:
2	chr9:21835433..21837230-chr9:22087547..22089393,2	MCF-7	breast:
3	chr9:22084984..22089844-chr9:22117518..22121243,5	MCF-7	breast:
4	chr9:22051930..22054348-chr9:22086021..22088331,2	MCF-7	breast:
5	chr9:22079850..22083849-chr9:22087242..22090618,5	MCF-7	breast:
6	chr9:21801904..21804122-chr9:22086706..22088895,2	MCF-7	breast:
7	chr9:22082310..22089949-chr9:22236353..22239754,11	MCF-7	breast:
8	chr9:21993116..21995180-chr9:22087072..22089483,2	MCF-7	breast:
9	chr9:22078947..22090885-chr9:22096375..22111093,52	MCF-7	breast:
10	chr9:22085206..22088406-chr9:22135474..22138114,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000099810	Chromatin interaction
ENSG00000264545	Chromatin interaction
ENSG00000147889	Chromatin interaction
ENSG00000240498	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16905652	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4990722	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58886249	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59906350	0.81[AFR][1000 genomes]
rs60490000	0.81[AMR][1000 genomes]
rs7022719	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73441286	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73444375	0.81[AMR][1000 genomes]
rs73444381	0.81[AMR][1000 genomes]
rs73650048	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650050	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7853953	0.91[AMR][1000 genomes]
rs7869069	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7870178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22080600-22089400	Weak transcription	Dnd41	blood
2	chr9:22080600-22098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:22085200-22088200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:22085400-22088400	Weak transcription	HSMMtube	muscle
5	chr9:22085600-22088600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:22085800-22088400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:22085800-22088400	Weak transcription	NHEK	skin
8	chr9:22085800-22089400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:22086000-22088200	Weak transcription	HMEC	breast
10	chr9:22086000-22088400	Weak transcription	Hela-S3	cervix
11	chr9:22086000-22097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:22086200-22088200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr9:22086600-22089200	Enhancers	Fetal Intestine Small	intestine
14	chr9:22086800-22089800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:22087800-22089600	Enhancers	Fetal Intestine Large	intestine
16	chr9:22088000-22088600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:22088000-22089000	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links