Variant report

Variant	rs73650207
Chromosome Location	chr9:79000905-79000906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:78994805..78996335-chr9:79000595..79002259,2	MCF-7	breast:
2	chr9:78992647..78994850-chr9:78999374..79002879,3	K562	blood:
3	chr9:78999922..79001730-chr9:79004371..79006300,2	MCF-7	breast:
4	chr9:78992210..78995895-chr9:78999208..79002045,3	MCF-7	breast:
5	chr9:78991796..78994850-chr9:78999374..79004024,5	K562	blood:
6	chr4:137675367..137675982-chr9:79000462..79001258,2	MCF-7	breast:
7	chr9:78999441..79001000-chr9:79008117..79009884,2	K562	blood:

Variant related genes	Relation type
ENSG00000135002	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10114106	1.00[AMR][1000 genomes]
rs10429486	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12344624	1.00[AMR][1000 genomes]
rs12351053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352057	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620970	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78986600-79008400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:78987600-79007800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:78988200-79002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:78988200-79003200	Weak transcription	HSMMtube	muscle
5	chr9:78988200-79008400	Weak transcription	Brain Substantia Nigra	brain
6	chr9:78988200-79008400	Weak transcription	Fetal Heart	heart
7	chr9:78988400-79002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:78988600-79001000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:78988600-79001000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:78988600-79002400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:78988600-79007800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:78988600-79008200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:78988800-79006000	Weak transcription	Brain Angular Gyrus	brain
14	chr9:78988800-79007200	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:78988800-79008400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:78990000-79005400	Weak transcription	Small Intestine	intestine
17	chr9:78990200-79007800	Weak transcription	Fetal Brain Male	brain
18	chr9:78990200-79008400	Weak transcription	Right Ventricle	heart
19	chr9:78990400-79001000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:78990400-79002600	Weak transcription	Esophagus	oesophagus
21	chr9:78990400-79008200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:78990400-79008400	Weak transcription	Fetal Kidney	kidney
23	chr9:78990600-79002400	Weak transcription	Fetal Intestine Small	intestine
24	chr9:78990600-79003000	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:78990600-79005600	Weak transcription	K562	blood
26	chr9:78990600-79008400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr9:78990600-79008400	Weak transcription	Fetal Lung	lung
28	chr9:78990600-79008400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:78990800-79008400	Weak transcription	NHLF	lung
30	chr9:78991000-79002400	Weak transcription	Fetal Stomach	stomach
31	chr9:78992200-79008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:78994200-79005200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:78995200-79001800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:78995200-79003200	Weak transcription	Hela-S3	cervix
35	chr9:78995200-79007600	Weak transcription	Gastric	stomach
36	chr9:78995200-79007600	Weak transcription	HMEC	breast
37	chr9:78995200-79007600	Weak transcription	NHEK	skin
38	chr9:78995200-79008400	Weak transcription	Stomach Mucosa	stomach
39	chr9:78995200-79008600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:78996000-79008400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:78996200-79001400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:78996400-79001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:78996400-79002600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr9:78997000-79007600	Weak transcription	Lung	lung
45	chr9:78997600-79003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:78997600-79005800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:78997600-79008400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:78997800-79003600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr9:78997800-79004200	Strong transcription	Liver	Liver
50	chr9:78997800-79004200	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links