Variant report

Variant	rs73650222
Chromosome Location	chr9:79065905-79065906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79057975..79060162-chr9:79063071..79066178,3	MCF-7	breast:
2	chr9:79065522..79068324-chr9:79072541..79074229,2	MCF-7	breast:
3	chr9:79017044..79018975-chr9:79065546..79068177,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12345882	1.00[AMR][1000 genomes]
rs12347130	1.00[AMR][1000 genomes]
rs73650219	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79063000-79067400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:79063000-79068000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:79063000-79070800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:79063200-79066200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:79063400-79068000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:79063600-79067800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:79064200-79067600	Weak transcription	Fetal Brain Male	brain
8	chr9:79064400-79067200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:79064600-79071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:79065000-79066800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:79065000-79066800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:79065000-79067000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:79065200-79066800	Enhancers	NHLF	lung
14	chr9:79065200-79067000	Enhancers	HSMM	muscle
15	chr9:79065200-79069200	Enhancers	NHDF-Ad	bronchial
16	chr9:79065400-79066800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:79065400-79067000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:79065400-79067000	Enhancers	Osteobl	bone
19	chr9:79065800-79066200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:79065800-79066200	Enhancers	A549	lung
21	chr9:79065800-79066400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:79065800-79066600	Enhancers	HSMMtube	muscle
23	chr9:79065800-79066800	Enhancers	NH-A	brain

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