Variant report

Variant	rs73650253
Chromosome Location	chr9:93561710-93561711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:93561610-93562152	HL-60	blood:	n/a	n/a
2	FOXA1	chr9:93561565-93561982	T-47D	breast:	n/a	chr9:93561744-93561759 chr9:93561783-93561798 chr9:93561803-93561818
3	FOXA1	chr9:93561602-93561904	T-47D	breast:	n/a	chr9:93561744-93561759 chr9:93561783-93561798 chr9:93561803-93561818

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93557618..93560728-chr9:93560879..93563311,3	K562	blood:

Variant related genes	Relation type
SYK	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12342993	1.00[EUR][1000 genomes]
rs7046656	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv893569	chr9:93552550-93587089	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1813758	chr9:93557698-93573095	Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93551800-93563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93552000-93563400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:93556000-93563400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:93557600-93562800	Weak transcription	Fetal Intestine Large	intestine
5	chr9:93557600-93563400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:93557600-93563400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:93557600-93563400	Weak transcription	Pancreas	Pancrea
8	chr9:93558800-93562800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:93559000-93562400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:93559000-93563800	Weak transcription	Gastric	stomach
11	chr9:93559200-93561800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr9:93559200-93562400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr9:93559200-93562600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:93559200-93562800	Weak transcription	Fetal Thymus	thymus
15	chr9:93559200-93563200	Weak transcription	Thymus	Thymus
16	chr9:93559400-93561800	Weak transcription	GM12878-XiMat	blood
17	chr9:93559400-93562400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:93559400-93562600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:93559400-93562800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:93559400-93563200	Weak transcription	Stomach Mucosa	stomach
21	chr9:93561200-93564000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr9:93561400-93563200	Enhancers	Primary B cells from cord blood	blood

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