Variant report

Variant	rs73651522
Chromosome Location	chr9:94544992-94544993
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94543593..94546607-chr9:94711686..94713670,3	K562	blood:
2	chr9:94542440..94546170-chr9:94710664..94713670,3	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7036174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73651507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73651524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73651525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73651526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871037	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94533400-94549600	Weak transcription	Colonic Mucosa	Colon
2	chr9:94533600-94545400	Enhancers	Stomach Smooth Muscle	stomach
3	chr9:94534400-94546800	Weak transcription	Fetal Kidney	kidney
4	chr9:94537800-94545000	Weak transcription	Fetal Intestine Small	intestine
5	chr9:94537800-94546000	Weak transcription	Gastric	stomach
6	chr9:94538000-94548800	Weak transcription	Esophagus	oesophagus
7	chr9:94540600-94546000	Weak transcription	K562	blood
8	chr9:94540800-94545000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:94543200-94545400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:94543200-94546600	Enhancers	Fetal Lung	lung
11	chr9:94543400-94549200	Enhancers	Colon Smooth Muscle	Colon
12	chr9:94543600-94551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:94543800-94545000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:94543800-94545000	Enhancers	Fetal Stomach	stomach
15	chr9:94543800-94545200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:94543800-94549000	Weak transcription	Fetal Heart	heart
17	chr9:94544200-94545400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:94544200-94545800	Enhancers	Primary T cells from cord blood	blood
19	chr9:94544400-94545000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:94544400-94545200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr9:94544400-94545400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:94544600-94545000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:94544600-94545800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:94544600-94546600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:94544600-94551000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:94544800-94545200	Weak transcription	Ovary	ovary
27	chr9:94544800-94545400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr9:94544800-94545800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:94544800-94546200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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