Variant report

Variant	rs73651566
Chromosome Location	chr9:94595968-94595969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94591392..94592961-chr9:94594858..94596367,2	K562	blood:
2	chr9:94584589..94586242-chr9:94594324..94596965,2	K562	blood:
3	chr9:94588743..94592515-chr9:94595352..94598489,3	MCF-7	breast:
4	chr9:94586540..94588666-chr9:94592596..94596432,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11999739	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12002460	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12002884	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12003273	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12003585	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16907830	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907877	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907893	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1881386	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28802998	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59004196	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61160043	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7022887	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7031514	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7041908	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7045708	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73519115	0.82[ASN][1000 genomes]
rs73651562	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73651565	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651574	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651579	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651580	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651581	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651582	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651583	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651584	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7866996	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969713	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94588000-94596000	Weak transcription	Fetal Intestine Small	intestine
2	chr9:94594600-94610800	Enhancers	Fetal Thymus	thymus
3	chr9:94595400-94596000	Enhancers	Stomach Smooth Muscle	stomach
4	chr9:94595400-94596600	Enhancers	Spleen	Spleen
5	chr9:94595400-94599800	Enhancers	Ovary	ovary
6	chr9:94595600-94596200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:94595600-94596200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:94595600-94596400	Enhancers	Colon Smooth Muscle	Colon
9	chr9:94595600-94597200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:94595600-94597400	Enhancers	Placenta	Placenta
11	chr9:94595600-94597600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:94595600-94598200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:94595600-94598400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:94595600-94599200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:94595600-94599800	Weak transcription	K562	blood
16	chr9:94595600-94600000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:94595600-94600600	Enhancers	Fetal Stomach	stomach
18	chr9:94595800-94596200	Enhancers	Gastric	stomach
19	chr9:94595800-94596200	Enhancers	Rectal Smooth Muscle	rectum
20	chr9:94595800-94596200	Enhancers	Right Atrium	heart
21	chr9:94595800-94596600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:94595800-94596600	Enhancers	Fetal Heart	heart
23	chr9:94595800-94596800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:94595800-94596800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr9:94595800-94598400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:94595800-94598400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr9:94595800-94600200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links