Variant report

Variant	rs73651596
Chromosome Location	chr9:94649586-94649587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr9:94649451-94650131	K562	blood:	n/a	n/a
2	STAT3	chr9:94649528-94650150	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ROR2	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10512218	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12002460	0.97[ASN][1000 genomes]
rs12002884	0.97[ASN][1000 genomes]
rs12003273	0.84[ASN][1000 genomes]
rs16907877	0.97[ASN][1000 genomes]
rs16907893	0.97[ASN][1000 genomes]
rs16907940	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881386	0.97[ASN][1000 genomes]
rs28802998	0.97[ASN][1000 genomes]
rs56225147	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61160043	0.97[ASN][1000 genomes]
rs7031514	0.97[ASN][1000 genomes]
rs7041908	0.97[ASN][1000 genomes]
rs7045708	0.97[ASN][1000 genomes]
rs73519115	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73519130	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73519140	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73651574	0.97[ASN][1000 genomes]
rs73651579	0.97[ASN][1000 genomes]
rs73651580	0.97[ASN][1000 genomes]
rs73651581	0.97[ASN][1000 genomes]
rs73651582	0.97[ASN][1000 genomes]
rs73651583	0.97[ASN][1000 genomes]
rs73651584	0.97[ASN][1000 genomes]
rs73651595	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866996	0.97[ASN][1000 genomes]
rs9969713	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94643200-94650400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:94644400-94650800	Weak transcription	Right Atrium	heart
4	chr9:94646000-94649800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:94646000-94651600	Enhancers	K562	blood
6	chr9:94646000-94652600	Enhancers	Ovary	ovary
7	chr9:94646000-94654800	Enhancers	Fetal Lung	lung
8	chr9:94646200-94650800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:94646600-94651000	Enhancers	Placenta	Placenta
10	chr9:94646600-94654600	Enhancers	Fetal Stomach	stomach
11	chr9:94646600-94658200	Weak transcription	Fetal Heart	heart
12	chr9:94647200-94650000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:94647200-94650000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:94647200-94652600	Enhancers	Fetal Intestine Large	intestine
15	chr9:94647600-94650000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:94647800-94649800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:94647800-94652200	Weak transcription	Brain Substantia Nigra	brain
18	chr9:94648000-94650800	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:94648400-94651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:94648600-94650000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:94648600-94650000	Enhancers	Fetal Kidney	kidney
22	chr9:94648600-94650000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr9:94648600-94650000	Enhancers	NH-A	brain
24	chr9:94648800-94649600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr9:94648800-94653200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:94648800-94658400	Weak transcription	Pancreas	Pancrea
27	chr9:94648800-94661000	Weak transcription	Spleen	Spleen
28	chr9:94649000-94649600	Enhancers	Osteobl	bone
29	chr9:94649000-94649800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:94649000-94649800	Enhancers	NHLF	lung
31	chr9:94649000-94650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:94649000-94651600	Enhancers	Fetal Intestine Small	intestine
33	chr9:94649200-94649600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
34	chr9:94649200-94649800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:94649400-94649600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr9:94649400-94649600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr9:94649400-94649600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr9:94649400-94649600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr9:94649400-94649800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:94649400-94649800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:94649400-94649800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
42	chr9:94649400-94649800	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:94649400-94650000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
44	chr9:94649400-94650000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:94649400-94650800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:94649400-94663200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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