Variant report

Variant	rs73652839
Chromosome Location	chr9:22031052-22031053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22006840..22009770-chr9:22030122..22031727,2	MCF-7	breast:
2	chr9:22006075..22010521-chr9:22028543..22032768,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147883	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16935753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2151279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3217980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3217990	1.00[EUR][1000 genomes]
rs3217994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3217997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3217999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3218003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3218021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3218022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3218023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3731205	1.00[EUR][1000 genomes]
rs56235436	0.83[AMR][1000 genomes]
rs60693449	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61564778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652841	0.83[AMR][1000 genomes]
rs73652842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652843	1.00[EUR][1000 genomes]
rs73652845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22009800-22037000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:22022800-22032400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:22025000-22033800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:22025400-22039800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:22029000-22032400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:22029200-22031800	Strong transcription	Dnd41	blood
7	chr9:22029400-22032600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:22029400-22034200	Enhancers	HMEC	breast
9	chr9:22030000-22034200	Enhancers	NHEK	skin
10	chr9:22030200-22037400	Weak transcription	Primary B cells from cord blood	blood
11	chr9:22030400-22031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:22030400-22032000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:22030400-22035400	Weak transcription	HSMM	muscle
14	chr9:22030400-22038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr9:22030400-22040000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:22030600-22031600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:22030600-22032000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:22030600-22036800	Weak transcription	Fetal Intestine Large	intestine
19	chr9:22030800-22031200	Weak transcription	GM12878-XiMat	blood
20	chr9:22030800-22032000	Weak transcription	NHDF-Ad	bronchial
21	chr9:22030800-22032200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:22030800-22035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:22030800-22035400	Weak transcription	Osteobl	bone
24	chr9:22030800-22035600	Weak transcription	HSMMtube	muscle
25	chr9:22030800-22036800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:22030800-22037200	Weak transcription	Fetal Intestine Small	intestine
27	chr9:22030800-22041800	Weak transcription	Stomach Mucosa	stomach
28	chr9:22031000-22032200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:22031000-22036600	Weak transcription	Hela-S3	cervix
30	chr9:22031000-22037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:22031000-22037200	Weak transcription	Muscle Satellite Cultured Cells	--

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