Variant report

Variant	rs73653457
Chromosome Location	chr9:97055362-97055363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:97055358-97055440	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97054703..97056976-chr9:97060174..97062566,2	MCF-7	breast:
2	chr9:97052305..97055569-chr9:97062185..97065091,3	K562	blood:

Variant related genes	Relation type
VDAC1P11	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59637453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653448	1.00[AMR][1000 genomes]
rs73653454	1.00[AMR][1000 genomes]
rs73653455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7466359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97023000-97055400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:97036800-97062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:97039200-97062600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
8	chr9:97042200-97055400	Weak transcription	Esophagus	oesophagus
9	chr9:97042600-97061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
11	chr9:97042800-97057000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:97042800-97064000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:97042800-97064400	Weak transcription	Hela-S3	cervix
14	chr9:97043000-97057000	Weak transcription	HUVEC	blood vessel
15	chr9:97043000-97061400	Weak transcription	Fetal Thymus	thymus
16	chr9:97043200-97060000	Weak transcription	Fetal Lung	lung
17	chr9:97043200-97062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:97043200-97062800	Weak transcription	Brain Angular Gyrus	brain
19	chr9:97043200-97063000	Weak transcription	HMEC	breast
20	chr9:97043200-97064000	Weak transcription	Colonic Mucosa	Colon
21	chr9:97043200-97064400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97043800-97059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr9:97043800-97066400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:97044000-97059800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr9:97044000-97062600	Weak transcription	A549	lung
26	chr9:97046000-97063600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:97047000-97059200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:97048200-97059000	Strong transcription	Primary B cells from cord blood	blood
29	chr9:97048400-97060600	Strong transcription	Primary T cells from cord blood	blood
30	chr9:97048800-97058000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:97049600-97061000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:97050600-97062600	Weak transcription	Right Atrium	heart
33	chr9:97050800-97064600	Weak transcription	Right Ventricle	heart
34	chr9:97051000-97057400	Weak transcription	Psoas Muscle	Psoas
35	chr9:97051000-97061200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:97051600-97061400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:97052600-97064200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:97053400-97060200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:97053600-97058400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr9:97053600-97058400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:97053800-97057000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr9:97053800-97063400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr9:97054000-97055600	Strong transcription	HepG2	liver
44	chr9:97054000-97056400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:97054000-97057200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:97054000-97058400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:97054000-97059800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:97054000-97060400	Weak transcription	K562	blood
49	chr9:97054200-97055400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:97054200-97055400	Enhancers	Osteobl	bone

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