Variant report

Variant	rs73653631
Chromosome Location	chr9:97418969-97418970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97401282..97403980-chr9:97418251..97421085,4	MCF-7	breast:
2	chr9:97418815..97421643-chr9:97422033..97423738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41281166	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7029935	0.84[AFR][1000 genomes]
rs73654261	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7869331	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
2	chr9:97417800-97419000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:97417800-97419200	Enhancers	Primary hematopoietic stem cells	blood
4	chr9:97417800-97419200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:97417800-97419200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:97417800-97419800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:97418000-97419000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:97418000-97419000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:97418000-97419000	Active TSS	Duodenum Mucosa	Duodenum
10	chr9:97418000-97419000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr9:97418000-97419200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr9:97418000-97419200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:97418000-97419200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:97418000-97419200	Flanking Active TSS	GM12878-XiMat	blood
15	chr9:97418000-97419800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:97418000-97419800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:97418200-97419000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:97418200-97419000	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr9:97418200-97419000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr9:97418200-97419000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr9:97418200-97419000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:97418200-97419000	Flanking Active TSS	Fetal Thymus	thymus
23	chr9:97418200-97419200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr9:97418200-97420000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr9:97418200-97420200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:97418400-97419000	Enhancers	Brain Anterior Caudate	brain
27	chr9:97418400-97419000	Enhancers	Fetal Stomach	stomach
28	chr9:97418400-97419200	Enhancers	Left Ventricle	heart
29	chr9:97418400-97419400	Bivalent Enhancer	Fetal Brain Male	brain
30	chr9:97418400-97419400	Enhancers	Psoas Muscle	Psoas
31	chr9:97418400-97419800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr9:97418400-97419800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:97418400-97420000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr9:97418600-97419000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:97418600-97419000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:97418600-97419000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr9:97418600-97419000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr9:97418600-97419000	Bivalent/Poised TSS	Fetal Brain Female	brain
39	chr9:97418600-97419000	Enhancers	Placenta	Placenta
40	chr9:97418600-97419000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr9:97418600-97419000	Flanking Active TSS	Osteobl	bone
42	chr9:97418600-97419200	Bivalent Enhancer	Brain Germinal Matrix	brain
43	chr9:97418600-97419200	Enhancers	Fetal Heart	heart
44	chr9:97418600-97419400	Enhancers	Brain Cingulate Gyrus	brain
45	chr9:97418600-97419800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:97418600-97419800	Enhancers	Fetal Muscle Leg	muscle
47	chr9:97418600-97420000	Enhancers	Fetal Muscle Trunk	muscle
48	chr9:97418800-97419000	Weak transcription	Aorta	Aorta
49	chr9:97418800-97419000	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr9:97418800-97419000	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links