Variant report

Variant	rs73654027
Chromosome Location	chr9:94443717-94443718
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94438317..94440833-chr9:94442989..94444719,2	MCF-7	breast:
2	chr9:94443698..94444273-chr9:94489525..94490151,2	MCF-7	breast:
3	chr9:94421840..94422753-chr9:94443071..94444311,6	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12115281	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096029	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56406752	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073444	0.92[EUR][1000 genomes]
rs58861112	0.92[EUR][1000 genomes]
rs61616608	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73654016	0.92[EUR][1000 genomes]
rs73654017	0.92[EUR][1000 genomes]
rs73654026	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94438800-94451000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:94440400-94443800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:94440400-94443800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:94440400-94443800	Weak transcription	Fetal Lung	lung
5	chr9:94440400-94444400	Weak transcription	NHDF-Ad	bronchial
6	chr9:94440600-94455200	Weak transcription	Fetal Heart	heart
7	chr9:94441200-94443800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:94441400-94443800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:94441600-94443800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:94441600-94443800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:94441600-94443800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:94441800-94443800	Weak transcription	Fetal Thymus	thymus
13	chr9:94442400-94443800	Enhancers	Osteobl	bone
14	chr9:94442400-94445600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:94442400-94445600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:94443200-94443800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:94443200-94444000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:94443200-94444600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:94443200-94445400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:94443400-94443800	Weak transcription	NH-A	brain
21	chr9:94443400-94444600	Enhancers	Fetal Brain Male	brain
22	chr9:94443600-94443800	Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr9:94443600-94443800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr9:94443600-94443800	Enhancers	Primary hematopoietic stem cells	blood
25	chr9:94443600-94443800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:94443600-94443800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:94443600-94443800	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:94443600-94443800	Enhancers	Brain Germinal Matrix	brain
29	chr9:94443600-94443800	Enhancers	Fetal Stomach	stomach
30	chr9:94443600-94444000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:94443600-94444200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:94443600-94444200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:94443600-94444200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr9:94443600-94444200	Active TSS	Fetal Brain Female	brain
35	chr9:94443600-94444600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:94443600-94445600	Enhancers	Placenta	Placenta
37	chr9:94443600-94452400	Weak transcription	Stomach Smooth Muscle	stomach

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