Variant report

Variant	rs73654038
Chromosome Location	chr9:94475299-94475300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94186298..94187810-chr9:94475229..94478202,2	MCF-7	breast:
2	chr9:94474813..94478609-chr9:94479157..94482495,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56138625	0.86[AFR][1000 genomes]
rs56980954	0.91[AFR][1000 genomes]
rs59819891	0.91[AFR][1000 genomes]
rs73654035	0.91[AFR][1000 genomes]
rs73654036	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv521046	chr9:94456714-94476418	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv516266	chr9:94458669-94476418	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3362149	chr9:94471631-94475529	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3402195	chr9:94471631-94475529	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94458000-94489800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:94469400-94476600	Weak transcription	Colonic Mucosa	Colon
3	chr9:94469400-94476600	Weak transcription	Fetal Stomach	stomach
4	chr9:94472200-94476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:94472400-94476800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:94472800-94476600	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:94473000-94476600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:94473200-94476600	Weak transcription	Right Atrium	heart
9	chr9:94473400-94476000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:94473800-94483400	Weak transcription	K562	blood
11	chr9:94474200-94475400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:94474200-94475600	Enhancers	Fetal Thymus	thymus
13	chr9:94474200-94476200	Weak transcription	Fetal Lung	lung
14	chr9:94474200-94476600	Weak transcription	Gastric	stomach
15	chr9:94474200-94476600	Weak transcription	Lung	lung
16	chr9:94474200-94476600	Weak transcription	NH-A	brain
17	chr9:94474200-94480600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:94474200-94486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:94474400-94476000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:94474400-94476000	Weak transcription	Fetal Brain Male	brain
21	chr9:94474400-94476600	Weak transcription	Fetal Kidney	kidney
22	chr9:94474400-94476800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:94474400-94477800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:94474600-94475800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:94474600-94476200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:94474600-94476600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:94474600-94476600	Weak transcription	Pancreas	Pancrea
28	chr9:94474800-94476000	Weak transcription	Primary B cells from cord blood	blood
29	chr9:94474800-94476600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:94474800-94476600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:94474800-94476600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:94475000-94475400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:94475000-94475600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:94475000-94475800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:94475000-94476000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:94475000-94476200	Enhancers	Fetal Muscle Leg	muscle
37	chr9:94475200-94475600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr9:94475200-94476000	Enhancers	Primary T cells from cord blood	blood
39	chr9:94475200-94476000	Weak transcription	Osteobl	bone
40	chr9:94475200-94476600	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:94475200-94476600	Enhancers	GM12878-XiMat	blood
42	chr9:94475200-94477600	Weak transcription	Brain Germinal Matrix	brain

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