Variant report

Variant	rs73654120
Chromosome Location	chr9:102353320-102353321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7023816	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7038518	0.94[AFR][1000 genomes]
rs73654119	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73654121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102351200-102355200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:102352400-102356000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:102352600-102353600	ZNF genes & repeats	GM12878-XiMat	blood
4	chr9:102352600-102353800	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:102352600-102354000	Enhancers	Primary B cells from cord blood	blood
6	chr9:102353000-102353400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:102353000-102353600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:102353000-102353600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:102353000-102353600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:102353200-102353600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:102353200-102356000	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links