Variant report

Variant	rs73654266
Chromosome Location	chr9:97485862-97485863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58243774	0.84[AFR][1000 genomes]
rs61543709	1.00[AFR][1000 genomes]
rs72747018	1.00[AFR][1000 genomes]
rs72747021	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97479000-97488400	Weak transcription	Fetal Intestine Large	intestine
2	chr9:97483400-97488200	Weak transcription	Placenta	Placenta
3	chr9:97483600-97488400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:97483600-97488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:97483600-97488600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:97483800-97488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:97483800-97488400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:97483800-97488400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:97483800-97488400	Weak transcription	NHEK	skin
10	chr9:97484000-97488400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:97484000-97488400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:97484200-97486600	Weak transcription	HepG2	liver
13	chr9:97484200-97488400	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:97484400-97488400	Weak transcription	Fetal Kidney	kidney
15	chr9:97484800-97488600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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