Variant report

Variant	rs73654539
Chromosome Location	chr9:97952012-97952013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97906541..97908120-chr9:97951638..97953781,2	MCF-7	breast:
2	chr9:97950616..97952464-chr9:98272435..98274822,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73654530	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73657024	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97930800-97952400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:97941000-97952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
4	chr9:97945600-97952400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:97945800-97952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:97946000-97952200	Weak transcription	Fetal Heart	heart
7	chr9:97946200-97955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:97946200-97955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:97948400-97952400	Weak transcription	HMEC	breast
10	chr9:97948800-97955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:97948800-97955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:97950200-97952400	Enhancers	K562	blood
13	chr9:97950400-97952200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:97950400-97952400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr9:97950400-97952400	Enhancers	Brain Substantia Nigra	brain
16	chr9:97950400-97952600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:97950400-97952600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:97950400-97952600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:97950400-97953000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:97950600-97952200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:97950600-97952200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:97950600-97952400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:97950600-97952400	Flanking Active TSS	HUVEC	blood vessel
24	chr9:97950600-97952600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr9:97950600-97952600	Enhancers	Fetal Intestine Small	intestine
26	chr9:97950600-97952800	Enhancers	Primary T cells from cord blood	blood
27	chr9:97950600-97953400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr9:97950800-97952400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr9:97950800-97952400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr9:97950800-97952600	Enhancers	Fetal Muscle Leg	muscle
31	chr9:97950800-97952800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:97950800-97959600	Weak transcription	Gastric	stomach
33	chr9:97951000-97952400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr9:97951000-97952400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:97951000-97952600	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr9:97951000-97952800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:97951200-97952200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:97951200-97952400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:97951200-97952600	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr9:97951200-97952600	Enhancers	Fetal Kidney	kidney
41	chr9:97951400-97952200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:97951400-97952200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:97951400-97952200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr9:97951400-97952200	Flanking Active TSS	Osteobl	bone
45	chr9:97951400-97952600	Enhancers	Brain Anterior Caudate	brain
46	chr9:97951400-97952800	Enhancers	Brain Germinal Matrix	brain
47	chr9:97951400-97953000	Enhancers	Right Ventricle	heart
48	chr9:97951600-97952200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:97951600-97952200	Flanking Active TSS	Fetal Lung	lung
50	chr9:97951600-97952200	Flanking Active TSS	Fetal Stomach	stomach

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