Variant report

Variant	rs73654826
Chromosome Location	chr9:98812630-98812631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98812221..98816024-chr9:98817583..98820363,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73654827	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98809000-98813200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:98809400-98813200	Enhancers	Fetal Lung	lung
3	chr9:98810200-98823400	Weak transcription	Right Atrium	heart
4	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
5	chr9:98810800-98813200	Enhancers	Brain Angular Gyrus	brain
6	chr9:98811000-98812800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:98811000-98815400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:98811200-98813000	Enhancers	Stomach Mucosa	stomach
9	chr9:98811200-98813400	Enhancers	Pancreas	Pancrea
10	chr9:98811200-98815600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:98811800-98812800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:98811800-98812800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:98812000-98813600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr9:98812000-98815000	Weak transcription	Fetal Kidney	kidney
15	chr9:98812200-98812800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:98812200-98813000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:98812200-98813000	Enhancers	Gastric	stomach
18	chr9:98812200-98813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:98812400-98813000	Enhancers	Brain Cingulate Gyrus	brain
21	chr9:98812400-98813400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:98812400-98818200	Weak transcription	Fetal Stomach	stomach
23	chr9:98812600-98812800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:98812600-98813000	Enhancers	Brain Substantia Nigra	brain
25	chr9:98812600-98813200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:98812600-98818200	Weak transcription	Esophagus	oesophagus

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