Variant report

Variant	rs73655857
Chromosome Location	chr9:116071710-116071711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116071207..116072159-chr9:116097719..116098604,2	K562	blood:
2	chr9:116071324..116072067-chr9:116420288..116420934,2	MCF-7	breast:
3	chr9:116068586..116075781-chr9:116167998..116173640,10	MCF-7	breast:
4	chr9:116069178..116072115-chr9:116101600..116103564,2	MCF-7	breast:
5	chr9:116071158..116072106-chr9:116168918..116169856,5	MCF-7	breast:
6	chr9:116071625..116073462-chr9:116076376..116079141,2	K562	blood:
7	chr9:116071329..116074445-chr9:116134233..116136581,3	MCF-7	breast:
8	chr9:116070170..116072936-chr9:116138935..116140913,2	MCF-7	breast:
9	chr9:116071201..116072146-chr9:116168871..116169569,4	MCF-7	breast:
10	chr9:116071195..116071738-chr9:116163402..116163908,2	MCF-7	breast:
11	chr9:116070123..116071918-chr9:116134499..116138293,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000119431	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000148218	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73655813	1.00[AMR][1000 genomes]
rs73655855	1.00[AMR][1000 genomes]
rs73655858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116055200-116085200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:116056000-116087000	Weak transcription	Thymus	Thymus
3	chr9:116062600-116075600	Weak transcription	Placenta	Placenta
4	chr9:116065400-116086800	Weak transcription	Gastric	stomach
5	chr9:116065600-116079000	Weak transcription	Fetal Intestine Small	intestine
6	chr9:116065600-116083400	Weak transcription	Esophagus	oesophagus
7	chr9:116070000-116080000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:116070200-116072400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:116070200-116077400	Weak transcription	Ovary	ovary
10	chr9:116070200-116077800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:116070800-116083800	Weak transcription	Spleen	Spleen
12	chr9:116071600-116072600	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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