Variant report

Variant	rs73656707
Chromosome Location	chr9:117717282-117717283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2989514	1.00[ASN][1000 genomes]
rs73656706	1.00[AFR][1000 genomes]
rs73656708	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117713600-117721000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:117714000-117717800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:117715400-117717600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr9:117715400-117720600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:117715600-117720800	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:117716200-117718000	Weak transcription	Spleen	Spleen
7	chr9:117716600-117718400	Enhancers	Fetal Lung	lung
8	chr9:117716600-117720200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:117716800-117717400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:117716800-117717400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:117716800-117717400	Enhancers	Adipose Nuclei	Adipose
12	chr9:117716800-117718400	Enhancers	Primary B cells from cord blood	blood
13	chr9:117716800-117720000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:117716800-117720000	Weak transcription	Osteobl	bone
15	chr9:117716800-117720200	Weak transcription	HMEC	breast
16	chr9:117716800-117720400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:117716800-117724200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:117717000-117720200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:117717000-117720200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:117717200-117717600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:117717200-117717800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:117717200-117720000	Weak transcription	Hela-S3	cervix

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