Variant report

Variant	rs73656749
Chromosome Location	chr9:118132558-118132559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56337367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566852	1.00[AMR][1000 genomes]
rs73566859	1.00[AMR][1000 genomes]
rs73656748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7865825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118119600-118135800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:118129800-118133200	Enhancers	NHDF-Ad	bronchial
3	chr9:118130000-118135200	Weak transcription	Stomach Mucosa	stomach
4	chr9:118130600-118134600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:118130600-118142400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:118130800-118134600	Weak transcription	NH-A	brain
7	chr9:118130800-118135200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:118131000-118135200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:118131200-118133200	Enhancers	Fetal Lung	lung
10	chr9:118131200-118135200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:118131400-118132600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:118131800-118132800	Enhancers	A549	lung
13	chr9:118132000-118134800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:118132200-118132600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:118132200-118134400	Weak transcription	HMEC	breast
16	chr9:118132200-118134600	Weak transcription	NHEK	skin
17	chr9:118132200-118134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:118132200-118134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:118132200-118135200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:118132200-118135200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:118132200-118135200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:118132200-118135200	Weak transcription	HSMM	muscle
23	chr9:118132200-118135200	Weak transcription	Osteobl	bone
24	chr9:118132400-118135200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:118132400-118135200	Weak transcription	NHLF	lung

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