Variant report

Variant	rs73657012
Chromosome Location	chr9:97664860-97664861
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97655373..97657795-chr9:97662890..97664945,2	MCF-7	breast:
2	chr9:97663421..97665287-chr9:97685547..97688142,2	MCF-7	breast:
3	chr9:97663154..97665025-chr9:97680451..97683627,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16911830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73657013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73657014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97655800-97668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97656400-97669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:97658800-97668400	Weak transcription	Pancreas	Pancrea
5	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97661000-97666000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:97661600-97686200	Weak transcription	Primary T cells from cord blood	blood
8	chr9:97661800-97665200	Flanking Active TSS	A549	lung
9	chr9:97662200-97665200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:97662400-97665000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:97662400-97665000	Enhancers	HMEC	breast
12	chr9:97662400-97665200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:97662400-97665600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:97662400-97666200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:97662400-97678600	Enhancers	Brain Substantia Nigra	brain
16	chr9:97662600-97669600	Weak transcription	Right Atrium	heart
17	chr9:97662600-97670000	Weak transcription	Fetal Intestine Small	intestine
18	chr9:97662600-97680400	Enhancers	Brain Hippocampus Middle	brain
19	chr9:97662800-97665400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:97662800-97669200	Weak transcription	Lung	lung
21	chr9:97662800-97670000	Weak transcription	Fetal Intestine Large	intestine
22	chr9:97663200-97665000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97663200-97665200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:97663200-97665400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:97663200-97666600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:97663400-97665000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr9:97663400-97665000	Enhancers	Fetal Lung	lung
28	chr9:97663400-97665000	Enhancers	Hela-S3	cervix
29	chr9:97663400-97665600	Enhancers	NHEK	skin
30	chr9:97663400-97666400	Enhancers	NHDF-Ad	bronchial
31	chr9:97663400-97666400	Enhancers	Osteobl	bone
32	chr9:97663400-97667400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:97663400-97667600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:97663400-97669000	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:97663400-97669200	Weak transcription	Fetal Heart	heart
36	chr9:97663400-97671200	Enhancers	HepG2	liver
37	chr9:97663600-97665000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:97663600-97668000	Enhancers	NHLF	lung
39	chr9:97663600-97669000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:97663600-97669600	Weak transcription	Fetal Stomach	stomach
41	chr9:97663800-97665000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:97663800-97666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:97663800-97666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:97663800-97666600	Enhancers	Placenta	Placenta
45	chr9:97663800-97667400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:97663800-97669600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:97664200-97665200	Enhancers	Brain Anterior Caudate	brain
48	chr9:97664200-97665800	Weak transcription	Aorta	Aorta
49	chr9:97664400-97669600	Weak transcription	Colon Smooth Muscle	Colon
50	chr9:97664600-97666400	Enhancers	HSMM	muscle

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