Variant report

Variant	rs73660271
Chromosome Location	chr9:123273475-123273476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:123271955..123274624-chr9:123275742..123278633,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7030566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73660266	1.00[AMR][1000 genomes]
rs73660267	0.81[AFR][1000 genomes]
rs73660268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73660269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825069	chr9:123220951-123294240	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv33143	chr9:123253701-123471089	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831711	chr9:123265308-123467641	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:123208800-123294200	Weak transcription	Stomach Mucosa	stomach
2	chr9:123237600-123287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:123239800-123278800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:123243600-123287200	Weak transcription	NHLF	lung
5	chr9:123245000-123275800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:123246000-123285000	Weak transcription	Psoas Muscle	Psoas
7	chr9:123249800-123274800	Weak transcription	Placenta	Placenta
8	chr9:123250200-123274200	Weak transcription	Right Ventricle	heart
9	chr9:123250200-123286800	Weak transcription	Colonic Mucosa	Colon
10	chr9:123253000-123276200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:123253200-123275800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:123253400-123274800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:123253400-123275600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:123253400-123275600	Weak transcription	Small Intestine	intestine
15	chr9:123253400-123279000	Weak transcription	Pancreas	Pancrea
16	chr9:123253400-123279000	Weak transcription	NH-A	brain
17	chr9:123253600-123287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:123253800-123277600	Weak transcription	HUVEC	blood vessel
19	chr9:123254200-123286400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:123260800-123278800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:123262600-123277400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:123263000-123278000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr9:123263200-123273600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr9:123263200-123283200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:123263600-123277200	Strong transcription	Fetal Intestine Large	intestine
26	chr9:123263600-123313800	Strong transcription	Fetal Thymus	thymus
27	chr9:123263600-123314200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr9:123263800-123282400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr9:123264000-123282800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:123264200-123274600	Weak transcription	Osteobl	bone
31	chr9:123264800-123276200	Weak transcription	Brain Anterior Caudate	brain
32	chr9:123264800-123276400	Weak transcription	Gastric	stomach
33	chr9:123266200-123274400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:123266200-123279000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:123267000-123275800	Weak transcription	Spleen	Spleen
36	chr9:123267400-123296200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:123268400-123274400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:123268400-123281600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:123268600-123284400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr9:123268800-123276600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr9:123268800-123277200	Strong transcription	HepG2	liver
42	chr9:123269200-123278200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:123269200-123281200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr9:123269200-123282200	Strong transcription	Primary T cells from cord blood	blood
45	chr9:123269600-123273600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:123269600-123273800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr9:123269600-123274400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr9:123269800-123274200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:123269800-123281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:123269800-123281400	Strong transcription	Fetal Muscle Trunk	muscle

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