Variant report

Variant	rs73661429
Chromosome Location	chr9:136393764-136393765
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr9:136393550-136394050	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr9:136393708-136393943	ECC-1	luminal epithelium:	n/a	n/a
3	TEAD4	chr9:136393597-136394060	H1-hESC	embryonic stem cell:	n/a	n/a
4	TCF12	chr9:136393643-136393929	H1-hESC	embryonic stem cell:	n/a	chr9:136393790-136393798 chr9:136393797-136393805
5	SIN3A	chr9:136393649-136394032	H1-hESC	embryonic stem cell:	n/a	chr9:136393745-136393756
6	ZNF143	chr9:136393503-136393834	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3AK20	chr9:136393634-136393973	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:136391559..136394179-chr9:136396681..136398640,3	MCF-7	breast:
2	chr9:136392388..136394201-chr9:136396495..136398208,2	K562	blood:

Variant related genes	Relation type
TMEM8C	TF binding region
ADAMTSL2	TF binding region
ENSG00000197859	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13288485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35984966	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66938753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894059	chr9:136123840-136486929	Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv894077	chr9:136166346-136515297	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv894078	chr9:136194595-136484292	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv933226	chr9:136224559-136407071	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv894083	chr9:136281753-136452144	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv894084	chr9:136281753-136458311	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv894085	chr9:136281753-136478442	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	nsv894092	chr9:136311679-136452144	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv894093	chr9:136311679-136458311	Genic enhancers Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv894094	chr9:136311679-136528721	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv894097	chr9:136333356-136407208	Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv894098	chr9:136335824-136452144	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv894099	chr9:136337168-136459543	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
17	nsv894100	chr9:136371224-136547602	Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
18	nsv894101	chr9:136378650-136458311	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv894102	chr9:136388223-136496708	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136390600-136394200	Enhancers	Liver	Liver
2	chr9:136390600-136394600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:136390600-136395000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:136390600-136395200	Enhancers	Fetal Lung	lung
5	chr9:136390800-136393800	Bivalent Enhancer	Adipose Nuclei	Adipose
6	chr9:136390800-136394400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:136390800-136394400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr9:136391000-136394200	Enhancers	Left Ventricle	heart
9	chr9:136391000-136394400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:136391000-136394400	Enhancers	Brain Cingulate Gyrus	brain
11	chr9:136391200-136394000	Enhancers	Brain Angular Gyrus	brain
12	chr9:136391200-136394200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:136391200-136394200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:136391200-136394400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:136391200-136394800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:136391200-136394800	Enhancers	Right Ventricle	heart
17	chr9:136391200-136395200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:136391200-136395600	Enhancers	Fetal Thymus	thymus
19	chr9:136391200-136396000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:136391400-136394000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:136391400-136394200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:136391400-136394400	Bivalent Enhancer	Fetal Intestine Small	intestine
23	chr9:136391400-136394400	Enhancers	Ovary	ovary
24	chr9:136391600-136394200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr9:136391600-136394200	Enhancers	Right Atrium	heart
26	chr9:136391600-136394400	Enhancers	Brain Germinal Matrix	brain
27	chr9:136391800-136395200	Bivalent Enhancer	Fetal Stomach	stomach
28	chr9:136392000-136393800	Flanking Active TSS	HSMMtube	muscle
29	chr9:136392000-136394200	Enhancers	Pancreas	Pancrea
30	chr9:136392000-136394600	Enhancers	Fetal Heart	heart
31	chr9:136392200-136397600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr9:136392200-136398800	Weak transcription	Gastric	stomach
33	chr9:136392400-136394200	Enhancers	Fetal Kidney	kidney
34	chr9:136392400-136397600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:136392400-136397600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:136392400-136397600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:136392600-136394200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
38	chr9:136392800-136394000	Weak transcription	Primary T cells from cord blood	blood
39	chr9:136392800-136394200	Flanking Active TSS	HSMM	muscle
40	chr9:136392800-136394400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr9:136392800-136394800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
42	chr9:136392800-136395600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr9:136393000-136393800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:136393000-136393800	Enhancers	Brain Substantia Nigra	brain
45	chr9:136393000-136394000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr9:136393000-136394200	Enhancers	Brain Anterior Caudate	brain
47	chr9:136393000-136394200	Enhancers	Brain Hippocampus Middle	brain
48	chr9:136393000-136394200	Bivalent Enhancer	Psoas Muscle	Psoas
49	chr9:136393000-136394400	Enhancers	Colon Smooth Muscle	Colon
50	chr9:136393000-136394600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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