Variant report

Variant	rs73662257
Chromosome Location	chr8:8846220-8846221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8838685..8840996-chr8:8844587..8846741,2	MCF-7	breast:
2	chr8:8844681..8846894-chr8:8850207..8853467,3	K562	blood:
3	chr8:8844911..8847892-chr8:8868363..8870612,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERI1-1	chr8:8845397-8846327	XLOC_006701

Variant related genes	Relation type
ENSG00000104626	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11990476	1.00[ASN][1000 genomes]
rs11992016	1.00[ASN][1000 genomes]
rs13252797	0.93[ASN][1000 genomes]
rs1594437	0.86[ASN][1000 genomes]
rs2043129	0.86[ASN][1000 genomes]
rs2043131	0.86[ASN][1000 genomes]
rs2060045	0.93[ASN][1000 genomes]
rs28510464	0.93[ASN][1000 genomes]
rs28587518	1.00[ASN][1000 genomes]
rs28740848	0.93[ASN][1000 genomes]
rs4840381	0.93[ASN][1000 genomes]
rs57395675	1.00[ASN][1000 genomes]
rs57693332	0.93[ASN][1000 genomes]
rs58594457	1.00[ASN][1000 genomes]
rs59374911	1.00[ASN][1000 genomes]
rs59454995	0.93[ASN][1000 genomes]
rs60274012	1.00[ASN][1000 genomes]
rs62492946	0.87[ASN][1000 genomes]
rs7004160	0.93[ASN][1000 genomes]
rs7014430	0.86[ASN][1000 genomes]
rs7014604	1.00[ASN][1000 genomes]
rs7016240	1.00[ASN][1000 genomes]
rs73514371	0.80[ASN][1000 genomes]
rs73514373	0.93[ASN][1000 genomes]
rs73518314	0.93[ASN][1000 genomes]
rs73518320	0.93[ASN][1000 genomes]
rs73522594	1.00[ASN][1000 genomes]
rs7814828	0.80[ASN][1000 genomes]
rs7836156	0.93[ASN][1000 genomes]
rs9987276	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8846200-8847000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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