Variant report

Variant	rs73662308
Chromosome Location	chr9:136730178-136730179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136716201..136719069-chr9:136729479..136731369,2	MCF-7	breast:
2	chr9:136724408..136730266-chr9:136853620..136859994,16	MCF-7	breast:
3	chr9:136725437..136727832-chr9:136728228..136730381,2	K562	blood:
4	chr9:136700961..136707109-chr9:136726164..136730903,8	MCF-7	breast:
5	chr9:136727889..136730312-chr9:136777373..136780335,2	MCF-7	breast:
6	chr9:136726221..136733157-chr9:136853321..136860155,11	MCF-7	breast:
7	chr9:136697764..136700285-chr9:136729110..136730934,2	MCF-7	breast:
8	chr9:136729185..136731068-chr9:136732644..136734219,2	K562	blood:
9	chr9:136647424..136648976-chr9:136729858..136732826,2	MCF-7	breast:
10	chr9:136729161..136730927-chr9:136820243..136822364,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56101185	0.81[AFR][1000 genomes]
rs73662304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662314	0.81[AFR][1000 genomes]
rs73663863	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136711400-136737800	Weak transcription	NH-A	brain
2	chr9:136721400-136738600	Weak transcription	HUVEC	blood vessel
3	chr9:136726200-136735400	Weak transcription	Aorta	Aorta
4	chr9:136726400-136730200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:136726600-136735200	Weak transcription	Gastric	stomach
6	chr9:136727800-136730200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:136727800-136738400	Weak transcription	HepG2	liver
8	chr9:136727800-136739000	Weak transcription	NHLF	lung
9	chr9:136728600-136730200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:136728600-136731400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:136729000-136731200	Weak transcription	Brain Angular Gyrus	brain
12	chr9:136729200-136730200	Strong transcription	Fetal Intestine Small	intestine
13	chr9:136729200-136730600	Weak transcription	Colonic Mucosa	Colon
14	chr9:136729200-136734400	Weak transcription	Primary B cells from cord blood	blood
15	chr9:136729600-136730200	Strong transcription	Pancreas	Pancrea
16	chr9:136729600-136730600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:136729600-136730800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:136729600-136731000	Strong transcription	NHEK	skin
19	chr9:136729600-136731800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:136729600-136732200	ZNF genes & repeats	Fetal Stomach	stomach
21	chr9:136729600-136734800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:136729600-136735000	Weak transcription	Left Ventricle	heart
23	chr9:136729600-136737600	Weak transcription	HSMM	muscle
24	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:136729800-136730400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:136729800-136730400	Weak transcription	Fetal Lung	lung
27	chr9:136729800-136730600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:136729800-136730800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:136729800-136730800	ZNF genes & repeats	A549	lung
30	chr9:136729800-136731000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:136729800-136732000	Weak transcription	Liver	Liver
32	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
33	chr9:136730000-136730200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:136730000-136730200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:136730000-136730200	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr9:136730000-136730200	ZNF genes & repeats	Osteobl	bone
37	chr9:136730000-136730600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr9:136730000-136730600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:136730000-136731200	ZNF genes & repeats	Hela-S3	cervix
40	chr9:136730000-136731400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
41	chr9:136730000-136731400	ZNF genes & repeats	Fetal Brain Female	brain
42	chr9:136730000-136731600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:136730000-136731600	ZNF genes & repeats	GM12878-XiMat	blood
44	chr9:136730000-136735200	Weak transcription	Right Atrium	heart
45	chr9:136730000-136735400	Weak transcription	Spleen	Spleen
46	chr9:136730000-136736800	Weak transcription	HMEC	breast
47	chr9:136730000-136737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:136730000-136738400	Weak transcription	Fetal Intestine Large	intestine
49	chr9:136730000-136739200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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