Variant report

Variant	rs73663134
Chromosome Location	chr8:11288084-11288085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:11287865-11288155	IMR90	lung:	n/a	chr8:11287992-11288003
2	CEBPB	chr8:11287895-11288143	K562	blood:	n/a	chr8:11287992-11288003
3	FOS	chr8:11287414-11288181	MCF10A-Er-Src	breast:	n/a	chr8:11287557-11287571 chr8:11287570-11287580 chr8:11287571-11287579
4	RUNX3	chr8:11287753-11288168	GM12878	blood:	n/a	n/a
5	MYC	chr8:11287423-11288182	MCF10A-Er-Src	breast:	n/a	chr8:11287848-11287857
6	FOS	chr8:11287403-11288106	MCF10A-Er-Src	breast:	n/a	chr8:11287557-11287571 chr8:11287570-11287580 chr8:11287571-11287579
7	FOS	chr8:11287423-11288084	MCF10A-Er-Src	breast:	n/a	chr8:11287557-11287571 chr8:11287570-11287580 chr8:11287571-11287579
8	CEBPB	chr8:11287864-11288143	A549	lung:	n/a	chr8:11287992-11288003
9	EP300	chr8:11287770-11288150	GM12878	blood:	n/a	n/a
10	FOS	chr8:11287424-11288131	MCF10A-Er-Src	breast:	n/a	chr8:11287557-11287571 chr8:11287570-11287580 chr8:11287571-11287579
11	CEBPB	chr8:11287821-11288135	HepG2	liver:	n/a	chr8:11287992-11288003
12	STAT3	chr8:11287475-11288175	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr8:11287884-11288184	MCF10A-Er-Src	breast:	n/a	n/a
14	MYC	chr8:11287442-11288181	MCF10A-Er-Src	breast:	n/a	chr8:11287848-11287857

Variant related genes	Relation type
C8orf12	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6983508	1.00[AMR][1000 genomes]
rs6994688	1.00[AMR][1000 genomes]
rs73663135	1.00[AMR][1000 genomes]
rs73663137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73663138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73663139	1.00[AMR][1000 genomes]
rs73663140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73663145	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv470183	chr8:11236975-11307118	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv465465	chr8:11245064-11307118	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv610275	chr8:11245064-11307118	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv522860	chr8:11253879-11330364	Bivalent/Poised TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1792231	chr8:11278307-11289053	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv890357	chr8:11286146-11330364	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11271600-11291000	Weak transcription	Pancreas	Pancrea
2	chr8:11276600-11291200	Weak transcription	Gastric	stomach
3	chr8:11279800-11289600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:11280600-11308800	Weak transcription	Primary B cells from cord blood	blood
5	chr8:11280800-11297600	Weak transcription	Spleen	Spleen
6	chr8:11284200-11288400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:11284800-11288200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:11284800-11288200	Enhancers	Brain Hippocampus Middle	brain
9	chr8:11284800-11288600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:11286000-11295200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:11286200-11306400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:11286400-11288200	Weak transcription	Brain Anterior Caudate	brain
13	chr8:11286400-11288400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:11286600-11288400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:11286600-11288600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:11286600-11296200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:11286800-11288400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:11287000-11289000	Enhancers	Placenta	Placenta
19	chr8:11287000-11289800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:11287200-11289800	Enhancers	Osteobl	bone
21	chr8:11287400-11288400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:11287400-11288400	Enhancers	GM12878-XiMat	blood
23	chr8:11287400-11291400	Weak transcription	Left Ventricle	heart
24	chr8:11287400-11296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:11287400-11296400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:11287400-11297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:11287600-11291600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:11287800-11288400	Weak transcription	NHEK	skin
29	chr8:11287800-11289400	Enhancers	Fetal Thymus	thymus
30	chr8:11287800-11289600	Enhancers	Thymus	Thymus
31	chr8:11287800-11291000	Weak transcription	Brain Angular Gyrus	brain
32	chr8:11287800-11300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:11287800-11300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:11287800-11313600	Weak transcription	Right Atrium	heart
35	chr8:11288000-11288400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:11288000-11288600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:11288000-11288600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:11288000-11289600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:11288000-11290800	Weak transcription	Brain Substantia Nigra	brain
40	chr8:11288000-11290800	Weak transcription	Fetal Heart	heart
41	chr8:11288000-11297600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links