Variant report

Variant	rs73667082
Chromosome Location	chr9:108674977-108674978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:32489011..32489531-chr9:108674824..108675689,2	MCF-7	breast:
2	chr9:108674585..108677315-chr9:108738998..108740830,2	MCF-7	breast:
3	chr9:108672760..108675101-chr9:110098994..110101048,2	MCF-7	breast:
4	chr9:108673478..108676397-chr9:109721391..109723728,2	MCF-7	breast:
5	chr9:108669187..108678029-chr9:108711816..108723206,29	MCF-7	breast:
6	chr9:108672824..108675555-chr9:108676544..108678880,2	MCF-7	breast:
7	chr9:108673529..108676504-chr9:109332780..109334808,2	MCF-7	breast:
8	chr9:108674817..108675675-chr9:109893654..109894276,2	MCF-7	breast:
9	chr9:108674706..108675762-chr9:108716067..108717001,6	MCF-7	breast:
10	chr9:108674841..108675762-chr9:108716167..108716908,4	MCF-7	breast:
11	chr9:108663725..108664575-chr9:108674798..108675705,5	MCF-7	breast:
12	chr9:108674312..108676473-chr9:108677250..108680180,2	K562	blood:
13	chr9:108671913..108676613-chr9:108714105..108718467,7	MCF-7	breast:
14	chr9:108663554..108664575-chr9:108674798..108675780,5	MCF-7	breast:
15	chr9:108674827..108675859-chr9:108716075..108716996,5	MCF-7	breast:
16	chr9:108643116..108645667-chr9:108673078..108675664,2	MCF-7	breast:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56105641	0.83[AFR][1000 genomes]
rs58788162	0.80[AFR][1000 genomes]
rs60435911	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61210555	1.00[AMR][1000 genomes]
rs71494570	0.83[AFR][1000 genomes]
rs73667080	1.00[AMR][1000 genomes]
rs7847775	0.84[AFR][1000 genomes]
rs7861494	0.84[AFR][1000 genomes]
rs7864698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108672200-108675400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:108672400-108675400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:108672400-108675400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:108672400-108676000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:108672600-108675200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:108672600-108675400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:108672600-108675400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:108672600-108675600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:108672600-108677000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:108672800-108675200	Enhancers	Brain Anterior Caudate	brain
11	chr9:108673000-108675400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:108673000-108677800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:108673200-108675000	Enhancers	Brain Hippocampus Middle	brain
14	chr9:108673200-108675200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:108673200-108675200	Enhancers	Brain Substantia Nigra	brain
16	chr9:108673200-108675400	Enhancers	Fetal Kidney	kidney
17	chr9:108673200-108675800	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:108673200-108676200	Enhancers	Hela-S3	cervix
19	chr9:108673200-108676600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:108673400-108675000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr9:108673400-108675400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:108673400-108675400	Enhancers	Fetal Muscle Leg	muscle
23	chr9:108673400-108675400	Flanking Active TSS	A549	lung
24	chr9:108673400-108676600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:108673600-108675000	Enhancers	Brain Angular Gyrus	brain
26	chr9:108673600-108675400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:108673600-108675400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:108673600-108675800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr9:108673600-108676000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:108673600-108676000	Enhancers	NHEK	skin
31	chr9:108673800-108675400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:108673800-108675400	Enhancers	Colon Smooth Muscle	Colon
33	chr9:108673800-108675600	Enhancers	Adipose Nuclei	Adipose
34	chr9:108673800-108675600	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:108673800-108675800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:108673800-108676200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:108673800-108679000	Enhancers	HMEC	breast
38	chr9:108674000-108675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:108674000-108677600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:108674000-108683600	Weak transcription	Left Ventricle	heart
41	chr9:108674200-108675200	Weak transcription	Right Atrium	heart
42	chr9:108674200-108675200	Weak transcription	Right Ventricle	heart
43	chr9:108674200-108675600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:108674200-108677600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr9:108674400-108675400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr9:108674400-108675600	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr9:108674400-108676800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr9:108674400-108683000	Weak transcription	Fetal Heart	heart
49	chr9:108674600-108675000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr9:108674600-108676000	Weak transcription	Psoas Muscle	Psoas

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