Variant report

Variant	rs73669751
Chromosome Location	chr8:20097536-20097537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12545976	0.81[AMR][1000 genomes]
rs58399138	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv6107	chr8:20056154-20100794	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3440486	chr8:20092872-20097870	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20090000-20103800	Weak transcription	HSMM	muscle
2	chr8:20090200-20102800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:20091200-20103800	Weak transcription	NHLF	lung
4	chr8:20092000-20097600	Enhancers	Fetal Brain Male	brain
5	chr8:20093800-20103000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:20093800-20103200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:20093800-20104200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:20094000-20109800	Weak transcription	Thymus	Thymus
9	chr8:20094800-20111800	Weak transcription	Fetal Thymus	thymus
10	chr8:20095200-20097600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:20096000-20097600	Enhancers	Fetal Muscle Leg	muscle
12	chr8:20096000-20109800	Weak transcription	Primary T cells from cord blood	blood
13	chr8:20096200-20097600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:20096200-20097600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:20096200-20103000	Weak transcription	Dnd41	blood
16	chr8:20096400-20097600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:20096400-20106000	Weak transcription	Placenta	Placenta
18	chr8:20096600-20109200	Weak transcription	Fetal Lung	lung
19	chr8:20096800-20103200	Weak transcription	Brain Germinal Matrix	brain
20	chr8:20096800-20103800	Weak transcription	Esophagus	oesophagus
21	chr8:20096800-20119400	Weak transcription	Right Atrium	heart
22	chr8:20097000-20102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:20097000-20109200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:20097200-20100600	Weak transcription	HSMMtube	muscle
25	chr8:20097200-20103600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:20097200-20109000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:20097200-20111800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:20097400-20099000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr8:20097400-20102800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:20097400-20103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:20097400-20103200	Weak transcription	Fetal Brain Female	brain
32	chr8:20097400-20108800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:20097400-20112400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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