Variant report

Variant	rs73672965
Chromosome Location	chr8:1736395-1736396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:1710662..1713548-chr8:1734331..1736456,2	MCF-7	breast:
2	chr8:1730297..1733181-chr8:1733346..1737804,5	K562	blood:
3	chr8:1734427..1736636-chr8:1737511..1739234,2	K562	blood:
4	chr8:1731117..1733181-chr8:1735872..1737982,3	K562	blood:
5	chr8:1712944..1715681-chr8:1734053..1736692,2	K562	blood:

Variant related genes	Relation type
ENSG00000182372	Chromatin interaction
ENSG00000253982	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57079165	1.00[AMR][1000 genomes]
rs73538746	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889697	chr8:1238564-1861971	Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv889707	chr8:1581839-1920461	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv889711	chr8:1591412-1904157	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1034490	chr8:1654716-1782467	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
10	nsv609527	chr8:1681733-1753497	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv870096	chr8:1682851-1767342	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
12	nsv532892	chr8:1687433-1839578	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	esv2755149	chr8:1689290-1755281	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
14	nsv465275	chr8:1697086-1768004	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
15	nsv609529	chr8:1697086-1768004	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
16	nsv465276	chr8:1701432-1777571	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
17	nsv609530	chr8:1701432-1777571	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
18	nsv609531	chr8:1717036-1965389	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1731600-1736600	Weak transcription	Aorta	Aorta
2	chr8:1732000-1737800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:1732000-1739000	Weak transcription	Fetal Brain Female	brain
4	chr8:1732600-1737200	Enhancers	Left Ventricle	heart
5	chr8:1732800-1736400	Enhancers	Lung	lung
6	chr8:1732800-1736400	Enhancers	Right Atrium	heart
7	chr8:1732800-1737800	Enhancers	Fetal Muscle Leg	muscle
8	chr8:1732800-1738600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:1733000-1737000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr8:1733000-1740000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:1733800-1737800	Enhancers	Fetal Heart	heart
12	chr8:1734000-1736400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:1734000-1736400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:1734000-1736400	Enhancers	Colon Smooth Muscle	Colon
15	chr8:1734000-1736400	Enhancers	Placenta	Placenta
16	chr8:1734000-1736400	Enhancers	Ovary	ovary
17	chr8:1734000-1736400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr8:1734000-1736400	Enhancers	Spleen	Spleen
19	chr8:1734000-1736400	Enhancers	NHLF	lung
20	chr8:1734000-1737800	Enhancers	Fetal Stomach	stomach
21	chr8:1734000-1737800	Enhancers	HSMMtube	muscle
22	chr8:1734200-1737000	Enhancers	Fetal Muscle Trunk	muscle
23	chr8:1734400-1736400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:1734400-1736400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:1734400-1736600	Enhancers	Fetal Lung	lung
26	chr8:1734600-1736400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:1734600-1737600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:1734800-1737800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:1735000-1737000	Enhancers	HUVEC	blood vessel
30	chr8:1735200-1736600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr8:1735200-1737600	Weak transcription	Stomach Mucosa	stomach
32	chr8:1735200-1737800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:1735200-1742200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:1735400-1736600	Enhancers	Small Intestine	intestine
35	chr8:1735600-1736400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr8:1735600-1736800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr8:1735600-1737000	Enhancers	Right Ventricle	heart
38	chr8:1735800-1736400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:1735800-1736400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:1735800-1736400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:1735800-1736400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr8:1735800-1736400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr8:1735800-1736400	Enhancers	Pancreas	Pancrea
44	chr8:1735800-1736400	Enhancers	HSMM	muscle
45	chr8:1735800-1736400	Flanking Active TSS	NHEK	skin
46	chr8:1735800-1736600	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr8:1735800-1737000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr8:1735800-1737000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr8:1735800-1737000	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr8:1735800-1737200	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links