Variant report

Variant	rs736736
Chromosome Location	chr5:58485031-58485032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16889254	1.00[JPT][hapmap]
rs16889258	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6868963	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6869149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6874089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7714707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7728221	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs922436	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
3	chr5:58472200-58485800	Weak transcription	Stomach Mucosa	stomach
4	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:58474800-58491000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:58479800-58487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:58479800-58489800	Weak transcription	Gastric	stomach
8	chr5:58480000-58485400	Weak transcription	Left Ventricle	heart
9	chr5:58480200-58488800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:58481000-58486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:58483800-58486000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:58484200-58485400	Active TSS	Brain Angular Gyrus	brain
13	chr5:58484200-58485600	Active TSS	Right Atrium	heart
14	chr5:58484400-58485200	Active TSS	A549	lung
15	chr5:58484400-58485400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:58484400-58485600	Enhancers	Fetal Muscle Trunk	muscle
17	chr5:58484400-58486000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:58484400-58489200	Weak transcription	Hela-S3	cervix
19	chr5:58484400-58489400	Weak transcription	HSMMtube	muscle
20	chr5:58484400-58489800	Active TSS	Right Ventricle	heart
21	chr5:58484600-58485600	Enhancers	Fetal Lung	lung
22	chr5:58484600-58485600	Active TSS	Psoas Muscle	Psoas
23	chr5:58484600-58486000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:58484600-58486000	Enhancers	Adipose Nuclei	Adipose
25	chr5:58484600-58486800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:58484600-58495600	Weak transcription	Fetal Kidney	kidney
27	chr5:58484800-58485200	Active TSS	Osteobl	bone
28	chr5:58484800-58485400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:58484800-58485600	Enhancers	HUVEC	blood vessel
30	chr5:58484800-58486000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:58484800-58486000	Enhancers	Fetal Intestine Large	intestine
32	chr5:58484800-58486000	Enhancers	Fetal Intestine Small	intestine
33	chr5:58484800-58486000	Enhancers	Fetal Muscle Leg	muscle
34	chr5:58484800-58486200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr5:58484800-58486600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:58484800-58486600	Enhancers	Colon Smooth Muscle	Colon
37	chr5:58484800-58489400	Weak transcription	NH-A	brain
38	chr5:58484800-58489800	Weak transcription	Fetal Heart	heart
39	chr5:58484800-58491000	Weak transcription	Fetal Stomach	stomach
40	chr5:58484800-58501200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:58485000-58485200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:58485000-58485400	Weak transcription	Pancreas	Pancrea
43	chr5:58485000-58485800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr5:58485000-58486000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:58485000-58486000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr5:58485000-58486600	Enhancers	Rectal Smooth Muscle	rectum
47	chr5:58485000-58489000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr5:58485000-58489200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr5:58485000-58489200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:58485000-58489800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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