Variant report

Variant	rs73677582
Chromosome Location	chr7:12320109-12320110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12319256..12322046-chr7:12323185..12326325,3	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs2192831	0.85[AFR][1000 genomes]
rs2192832	0.85[AFR][1000 genomes]
rs2216047	0.85[AFR][1000 genomes]
rs2356164	0.85[AFR][1000 genomes]
rs2356165	0.85[AFR][1000 genomes]
rs55638440	0.85[AFR][1000 genomes]
rs55664102	0.86[AFR][1000 genomes]
rs55717500	0.92[AFR][1000 genomes]
rs55802346	0.85[AFR][1000 genomes]
rs55838066	0.85[AFR][1000 genomes]
rs56038003	0.85[AFR][1000 genomes]
rs56212920	0.85[AFR][1000 genomes]
rs57429766	0.85[AFR][1000 genomes]
rs57550043	0.85[AFR][1000 genomes]
rs58848722	0.85[AFR][1000 genomes]
rs61248493	0.85[AFR][1000 genomes]
rs61275641	0.95[AFR][1000 genomes]
rs61386156	0.85[AFR][1000 genomes]
rs61600346	0.85[AFR][1000 genomes]
rs6460922	0.85[AFR][1000 genomes]
rs6460924	0.85[AFR][1000 genomes]
rs6945246	0.85[AFR][1000 genomes]
rs6945314	0.85[AFR][1000 genomes]
rs6945324	0.85[AFR][1000 genomes]
rs6945330	0.85[AFR][1000 genomes]
rs6951687	0.85[AFR][1000 genomes]
rs6951898	0.85[AFR][1000 genomes]
rs6952189	0.85[AFR][1000 genomes]
rs6959441	0.80[AFR][1000 genomes]
rs6959444	0.80[AFR][1000 genomes]
rs6965649	0.85[AFR][1000 genomes]
rs6969789	0.85[AFR][1000 genomes]
rs6971503	0.85[AFR][1000 genomes]
rs6977409	0.87[AFR][1000 genomes]
rs6979460	0.83[AFR][1000 genomes]
rs6979661	0.80[AFR][1000 genomes]
rs73677577	0.84[AFR][1000 genomes]
rs73677581	0.88[AFR][1000 genomes]
rs73677583	1.00[AFR][1000 genomes]
rs73677585	0.97[AFR][1000 genomes]
rs73677586	0.95[AFR][1000 genomes]
rs73677587	0.95[AFR][1000 genomes]
rs73677589	0.95[AFR][1000 genomes]
rs73677590	0.95[AFR][1000 genomes]
rs73677598	0.95[AFR][1000 genomes]
rs73677602	0.85[AFR][1000 genomes]
rs73678104	0.82[AFR][1000 genomes]
rs73679904	0.85[AFR][1000 genomes]
rs73679907	0.85[AFR][1000 genomes]
rs73679909	0.85[AFR][1000 genomes]
rs73679910	0.85[AFR][1000 genomes]
rs73679914	0.85[AFR][1000 genomes]
rs73679917	0.95[AFR][1000 genomes]
rs73679921	0.81[AFR][1000 genomes]
rs73679922	0.85[AFR][1000 genomes]
rs73679923	0.85[AFR][1000 genomes]
rs73679925	0.85[AFR][1000 genomes]
rs73679929	0.85[AFR][1000 genomes]
rs73679930	0.85[AFR][1000 genomes]
rs73679931	0.85[AFR][1000 genomes]
rs73679932	0.85[AFR][1000 genomes]
rs73679934	0.85[AFR][1000 genomes]
rs73679935	0.85[AFR][1000 genomes]
rs73679938	0.85[AFR][1000 genomes]
rs73679939	0.85[AFR][1000 genomes]
rs73679941	0.85[AFR][1000 genomes]
rs73679943	0.85[AFR][1000 genomes]
rs73679945	0.85[AFR][1000 genomes]
rs73679947	0.85[AFR][1000 genomes]
rs73679948	0.85[AFR][1000 genomes]
rs73679949	0.83[AFR][1000 genomes]
rs73679950	0.83[AFR][1000 genomes]
rs73679951	0.83[AFR][1000 genomes]
rs73679952	0.83[AFR][1000 genomes]
rs73679953	0.83[AFR][1000 genomes]
rs73679957	0.92[AFR][1000 genomes]
rs73679959	0.87[AFR][1000 genomes]
rs73679961	0.83[AFR][1000 genomes]
rs73679962	0.83[AFR][1000 genomes]
rs73679963	0.83[AFR][1000 genomes]
rs73679964	0.83[AFR][1000 genomes]
rs73679965	0.81[AFR][1000 genomes]
rs73679967	0.85[AFR][1000 genomes]
rs73679969	0.85[AFR][1000 genomes]
rs73679973	0.85[AFR][1000 genomes]
rs73679976	0.85[AFR][1000 genomes]
rs73680913	0.95[AFR][1000 genomes]
rs73680919	0.95[AFR][1000 genomes]
rs73680924	0.95[AFR][1000 genomes]
rs7779965	0.85[AFR][1000 genomes]
rs7798838	0.85[AFR][1000 genomes]
rs7798867	0.85[AFR][1000 genomes]
rs7810598	1.00[AFR][1000 genomes]
rs7811632	0.85[AFR][1000 genomes]
rs7811810	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12317800-12329400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links